RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA613025", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 8 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 8 ✖

bioproject 1

  • PRJNA613025 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
591737 591737 PRJNA613025_S_NODE_20441_length_216_cov_2.125749_g20287_i0 PRJNA613025 20441 216 2.125749 4.59161784 Palombiella stephensoni 391282 Platyhelminthes Platyhelminthes 67.6 6.81e-7   NTclustered gi|109631068|gb|DQ665988.1| 391282 g20287 i0 97.436 10.0416666666667 39 1 18 0 124 162 1266 1304 Palombiella stephensoni 28S ribosomal RNA gene, partial sequence blastn 2169 67.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Bdellouridae Palombiella Palombiella stephensoni
1867734 1867734 PRJNA613025_S_NODE_22502_length_202_cov_3.000000_g22348_i0 PRJNA613025 22502 202 3 6.06 Macrostomum poznaniense 2614303 Platyhelminthes Platyhelminthes 374 3.3e-99   NTclustered gi|1837893560|gb|MT429061.1| 2614303 g22348 i0 100 99.8613861386139 202 0 100 0 1 202 206 5 Macrostomum poznaniense voucher MTP_LS_2365 large subunit ribosomal RNA gene, partial sequence blastn 20172 374 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum poznaniense
4419086 4419086 PRJNA613025_S_NODE_12944_length_317_cov_2.869403_g12790_i0 PRJNA613025 12944 317 2.869403 9.09600751 Macrostomum poznaniense 2614303 Platyhelminthes Platyhelminthes 586 6.579999999999998e-163   NTclustered gi|1837893560|gb|MT429061.1| 2614303 g12790 i0 100 100.271293375394 317 0 100 0 1 317 725 409 Macrostomum poznaniense voucher MTP_LS_2365 large subunit ribosomal RNA gene, partial sequence blastn 31786 586 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum poznaniense
9520262 9520262 PRJNA613025_S_NODE_29988_length_167_cov_1.330508_g29834_i0 PRJNA613025 29988 167 1.330508 2.22194836 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 309 7.53e-80   NTclustered gi|209968685|gb|FJ384848.1| 52061 g29834 i0 100 50.8203592814371 167 0 100 0 1 167 22 188 Stenostomum leucops isolate K04_75 28S ribosomal RNA gene, partial sequence blastn 8487 309 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
15894924 15894924 PRJNA613025_S_NODE_32633_length_163_cov_0.894737_g32479_i0 PRJNA613025 32633 163 0.894737 1.45842131 Gyratrix proavus 1524983 Platyhelminthes Platyhelminthes 165 1.67e-36   NTclustered gi|2070656566|gb|MZ599130.1| 1524983 g32479 i0 85.897 63.1288343558282 156 20 95 2 9 163 1477 1323 Gyratrix proavus isolate 86_KAT_M large subunit ribosomal RNA gene, partial sequence blastn 10290 165 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Polycystididae Gyratrix Gyratrix proavus
24100654 24100654 PRJNA613025_S_NODE_25379_length_186_cov_2.262774_g25225_i0 PRJNA613025 25379 186 2.262774 4.20875964 Macrostomum 39217 Platyhelminthes Platyhelminthes 337 3.9199999999999994e-88   NTclustered gi|848094824|gb|KP730496.1| 52054 g25225 i0 99.459 90.9731182795699 185 1 99 0 1 185 37 221 Macrostomum tuba voucher MTP LS 586 18S ribosomal RNA gene, partial sequence blastn 16921 337 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum tuba
26953558 26953558 PRJNA613025_S_NODE_28082_length_174_cov_2.408000_g27928_i0 PRJNA613025 28082 174 2.408 4.18992 Trichobilharzia regenti 157069 Platyhelminthes Platyhelminthes 98.6 4.11e-23   NR CAH8870124.1 157069 g27928 i0 82.1 0.96551724137931 56 10 96.6 0 5 172 71 126 CAH8870124.1 unnamed protein product [Trichobilharzia regenti] diamond 168 98.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Trichobilharzia Trichobilharzia regenti
31547244 31547244 PRJNA613025_S_NODE_26596_length_181_cov_0.863636_g26442_i0 PRJNA613025 26596 181 0.863636 1.56318116 Opisthokonta 33154 Platyhelminthes Platyhelminthes 44.7 0.00345   NR AAX27390.2 6182 g26442 i0 39.7 13.4585635359116 58 33 96.1 1 175 2 315 370 AAX27390.2 SJCHGC06130 protein, partial [Schistosoma japonicum] diamond 2436 45.1 0.991130820399113 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;