RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA613025", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 20 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 20 ✖

bioproject 1

  • PRJNA613025 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1867534 1867534 PRJNA613025_S_NODE_14482_length_287_cov_5.319328_g14328_i0 PRJNA613025 14482 287 5.319328 15.26647136 Gromochytrium mamkaevae 1486924 Fungi Fungi 78.7 4.38e-10   NTclustered gi|612507318|gb|KF586842.1| 1486924 g14328 i0 97.778 4.78397212543554 45 1 16 0 5 49 6175 6131 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1373 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
1868144 1868144 PRJNA613025_S_NODE_7802_length_485_cov_25.314220_g7650_i0 PRJNA613025 7802 485 25.31422 122.773967 Rhizophydium sp. 2012224 Fungi Fungi 392 2.4499999999999998e-104   NTclustered gi|1866582435|gb|MT730610.1| 2012224 g7650 i0 82.52 100.878350515464 492 43 100 24 1 485 4424 3969 Rhizophydium sp. isolate ARG035 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 48926 392 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp.
3142668 3142668 PRJNA613025_S_NODE_2423_length_1184_cov_3.409692_g2338_i0 PRJNA613025 2423 1184 3.409692 40.37075328 Piromyces sp. 45796 Fungi Fungi 1075 0   NTclustered gi|1388116266|gb|MH043820.1| 45796 g2338 i0 100 75.897804054054 582 0 49 0 603 1184 582 1 Piromyces sp. strain B5 Glycosyl hydrolase family 43 mRNA, partial cds blastn 89863 1075 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.
5695402 5695402 PRJNA613025_S_NODE_25205_length_187_cov_1.847826_g25051_i0 PRJNA613025 25205 187 1.847826 3.45543462 Rhizoclosmatium hyalinum 2724196 Fungi Fungi 73.2 4.08e-14   NR KAJ3073494.1 2724196 g25051 i0 70 0.802139037433155 50 15 80.2 0 11 160 137 186 KAJ3073494.1 60S ribosomal protein L9A [Rhizoclosmatium hyalinum] diamond 150 73.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium hyalinum
8244793 8244793 PRJNA613025_S_NODE_20587_length_215_cov_1.837349_g20433_i0 PRJNA613025 20587 215 1.837349 3.95030035 Eukaryota 2759 Fungi Fungi 116 4.7399999999999994e-30   NR KAJ3387474.1 109889 g20433 i0 81.2 16.7302325581395 69 13 96.3 0 2 208 11 79 KAJ3387474.1 40S ribosomal protein S4 [Lobulomyces angularis] diamond 3597 116 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae Lobulomyces Lobulomyces angularis
19000265 19000265 PRJNA613025_S_NODE_28035_length_174_cov_9.192000_g27881_i0 PRJNA613025 28035 174 9.192 15.99408 Chytriomycetaceae 1352827 Fungi Fungi 163 6.480000000000001e-36   NTclustered gi|1866582659|gb|MT730834.1| 2012244 g27881 i0 83.908 101.264367816092 174 24 100 4 1 174 4174 4005 Rhizoclosmatium sp. isolate JEL0824 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17620 163 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium sp.
22269110 22269110 PRJNA613025_S_NODE_30338_length_167_cov_0.864407_g30184_i0 PRJNA613025 30338 167 0.864407 1.44355969 Spizellomyces punctatus 109760 Fungi Fungi 60.2 8.37e-5   NTclustered gi|1026978967|ref|XM_016752275.1| 645134 g30184 i0 97.143 0.209580838323353 35 1 21 0 20 54 202 236 Spizellomyces punctatus DAOM BR117 60S ribosomal protein L37-A (SPPG_04030), partial mRNA blastn 35 60.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
24818052 24818052 PRJNA613025_S_NODE_23100_length_199_cov_1.020000_g22946_i0 PRJNA613025 23100 199 1.02 2.0298 Polychytrium aggregatum 110093 Fungi Fungi 148 2.1399999999999997e-31   NTclustered gi|2432131389|ref|XM_053109302.1| 110093 g22946 i0 80.402 7.87437185929648 199 35 99 3 3 199 674 478 Polychytrium aggregatum ribosomal protein S3Ae (BJ171DRAFT_487525), mRNA blastn 1567 148 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
27206466 27206466 PRJNA613025_S_NODE_32562_length_163_cov_0.894737_g32408_i0 PRJNA613025 32562 163 0.894737 1.45842131 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 110 2.19e-26   NR KAH9257606.1 1357716 g32408 i0 90.7 0.993865030674847 54 5 99.4 0 162 1 275 328 KAH9257606.1 hypothetical protein BASA81_004055 [Batrachochytrium salamandrivorans] diamond 162 110 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
27219500 27219500 PRJNA613025_S_NODE_17162_length_248_cov_2.522613_g17008_i0 PRJNA613025 17162 248 2.522613 6.25608024 Chytriomyces 109882 Fungi Fungi 125 2.8199999999999996e-31   NR KAJ3237501.1 4814 g17008 i0 82.2 8.84274193548387 73 13 88.3 0 247 29 520 592 KAJ3237501.1 Aspartate aminotransferase, cytoplasmic [Chytriomyces hyalinus] diamond 2193 125 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus
27996368 27996368 PRJNA613025_S_NODE_32425_length_163_cov_1.324561_g32271_i0 PRJNA613025 32425 163 1.324561 2.15903443 Polyrhizophydium stewartii 2732419 Fungi Fungi 72.8 1.41e-14   NR KAL2915722.1 2732419 g32271 i0 69.8 1.95092024539877 53 16 97.5 0 161 3 68 120 KAL2915722.1 40S ribosomal protein S16 [Polyrhizophydium stewartii] diamond 318 72.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Polyrhizophydium Polyrhizophydium stewartii
28564632 28564632 PRJNA613025_S_NODE_30327_length_167_cov_0.864407_g30173_i0 PRJNA613025 30327 167 0.864407 1.44355969 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 107 2.32e-27   NR KAH9248333.1 1357716 g30173 i0 96.4 0.988023952095808 55 2 98.8 0 165 1 129 183 KAH9248333.1 ribosomal protein L10.e [Batrachochytrium salamandrivorans] diamond 165 107 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
29196214 29196214 PRJNA613025_S_NODE_23629_length_196_cov_1.027211_g23475_i0 PRJNA613025 23629 196 1.027211 2.01333356 Blyttiomyces sp. JEL 2750429 Fungi Fungi 69.7 5.44e-12   NR KAJ3314914.1 2724214 g23475 i0 50.8 0.964285714285714 63 29 93.4 1 3 185 301 363 KAJ3314914.1 hypothetical protein HDU76_002327 [Blyttiomyces sp. JEL0837] diamond 189 69.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes     Blyttiomyces Blyttiomyces sp. JEL0837
30504120 30504120 PRJNA613025_S_NODE_27233_length_178_cov_1.186047_g27079_i0 PRJNA613025 27233 178 1.186047 2.11116366 Opisthokonta 33154 Fungi Fungi 92.4 4.77e-20   NR KAJ3230186.1 4814 g27079 i0 74.1 61.5842696629214 58 15 97.8 0 3 176 439 496 KAJ3230186.1 hypothetical protein HDU81_004679 [Chytriomyces hyalinus] diamond 10962 92.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus
30617309 30617309 PRJNA613025_S_NODE_30913_length_166_cov_0.871795_g30759_i0 PRJNA613025 30913 166 0.871795 1.4471797 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 89.7 3.51e-19   NR KAH9257606.1 1357716 g30759 i0 75.9 0.975903614457831 54 13 97.6 0 3 164 393 446 KAH9257606.1 hypothetical protein BASA81_004055 [Batrachochytrium salamandrivorans] diamond 162 89.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
30680388 30680388 PRJNA613025_S_NODE_31433_length_165_cov_0.879310_g31279_i0 PRJNA613025 31433 165 0.87931 1.4508615 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 72.8 3.32e-13   NR KAH9248493.1 1357716 g31279 i0 61.8 1 55 21 100 0 1 165 229 283 KAH9248493.1 hypothetical protein BASA81_013819 [Batrachochytrium salamandrivorans] diamond 165 72.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
31470943 31470943 PRJNA613025_S_NODE_31216_length_165_cov_1.284483_g31062_i0 PRJNA613025 31216 165 1.284483 2.11939695 Polychytrium aggregatum 110093 Fungi Fungi 41.2 0.0459   NR XP_052971629.1 110093 g31062 i0 51.3 1.41818181818182 39 19 70.9 0 163 47 1405 1443 XP_052971629.1 uncharacterized protein BJ171DRAFT_470521 [Polychytrium aggregatum] diamond 234 41.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
31799895 31799895 PRJNA613025_S_NODE_30317_length_167_cov_0.864407_g30163_i0 PRJNA613025 30317 167 0.864407 1.44355969 Fungi 4751 Fungi Fungi 66.2 6.75e-11   NR KAI9020469.1 82268 g30163 i0 57.4 13.4191616766467 54 23 97 0 166 5 200 253 KAI9020469.1 pyridoxal phosphate-dependent transferase [Hyaloraphidium curvatum] diamond 2241 66.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
32148190 32148190 PRJNA613025_S_NODE_33758_length_161_cov_0.910714_g33604_i0 PRJNA613025 33758 161 0.910714 1.46624954 Synchytriaceae 286113 Fungi Fungi 90.9 1.32e-19   NR TPX54992.1 286115 g33604 i0 81.1 9.87577639751553 53 10 98.8 0 2 160 469 521 TPX54992.1 acetolactate synthase [Synchytrium endobioticum] diamond 1590 91.7 0.991275899672846 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
32685282 32685282 PRJNA613025_S_NODE_19060_length_228_cov_2.458101_g18906_i0 PRJNA613025 19060 228 2.458101 5.60447028 Opisthokonta 33154 Fungi Fungi 76.3 1.12e-14   NR KAI8852759.1 64509 g18906 i0 61.4 11.8157894736842 57 22 75 0 2 172 188 244 KAI8852759.1 40S ribosomal protein S4 [Chytridium lagenaria] diamond 2694 76.6 0.996083550913838 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Chytridium Chytridium lagenaria

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;