RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA613025", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA613025 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4419271 4419271 PRJNA613025_S_NODE_20004_length_220_cov_0.906433_g19850_i0 PRJNA613025 20004 220 0.906433 1.9941526 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 117 2.02e-28   NR MBI5475167.1 2049428 g19850 i0 78.1 6.94090909090909 73 16 99.5 0 1 219 275 347 MBI5475167.1 aconitate hydratase AcnA [Ignavibacteriales bacterium] diamond 1527 117 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
5695318 5695318 PRJNA613025_S_NODE_21885_length_206_cov_1.878981_g21731_i0 PRJNA613025 21885 206 1.878981 3.87070086 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 128 2.91e-25   NTclustered gi|1850842921|gb|CP053447.1| 2026749 g21731 i0 79.67 8.13106796116505 182 33 87 4 22 201 429948 429769 Ignavibacteriae bacterium isolate IGN3 chromosome blastn 1675 128 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
27807055 27807055 PRJNA613025_S_NODE_31364_length_165_cov_0.879310_g31210_i0 PRJNA613025 31364 165 0.87931 1.4508615 Ignavibacteria bacterium 2053306 Bacteria Bacteria 76.3 1.31e-14   NR MDP1993780.1 2053306 g31210 i0 67.3 3.98181818181818 55 18 100 0 1 165 123 177 MDP1993780.1 thiolase family protein [Ignavibacteria bacterium] diamond 657 76.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;