RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA611476" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA611476 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18441757 18441757 PRJNA611476_P_NODE_58775_length_287_cov_1.299065_g57984_i0 PRJNA611476 58775 287 1.299065 3.72831655 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.007   NTclustered gi|2319659066|ref|XM_001309088.2| 412133 g57984 i0 100 0.979094076655052 29 0 10 0 31 59 384 412 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0781670), partial mRNA blastn 281 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
21549619 21549619 PRJNA611476_P_NODE_2137_length_1350_cov_1.978857_g1619_i0 PRJNA611476 2137 1350 1.978857 26.7145695 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 111 4.17e-22   NR XP_067772694.1 135588 g1619 i0 26.6 2.90666666666667 417 244 84 13 204 1337 5 398 XP_067772694.1 C2 domain containing protein [Histomonas meleagridis] diamond 3924 111 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27378018 27378018 PRJNA611476_P_NODE_55703_length_293_cov_1.418182_g54912_i0 PRJNA611476 55703 293 1.418182 4.15527326 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 114 3.5700000000000005e-27   NR XP_067778113.1 135588 g54912 i0 58.7 6.75767918088737 92 38 94.2 0 284 9 161 252 XP_067778113.1 CAMK family protein kinase [Histomonas meleagridis] diamond 1980 115 0.991304347826087 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28122415 28122415 PRJNA611476_P_NODE_113725_length_242_cov_0.911243_g112934_i0 PRJNA611476 113725 242 0.911243 2.20520806 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 71.2 3.32e-12   NR XP_068354514.1 1144522 g112934 i0 55.6 1.99586776859504 54 24 66.9 0 81 242 512 565 XP_068354514.1 uncharacterized protein TRFO_07631 [Tritrichomonas foetus] diamond 483 71.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28280081 28280081 PRJNA611476_P_NODE_101026_length_245_cov_0.895349_g100235_i0 PRJNA611476 101026 245 0.895349 2.19360505 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 56.2 2.53e-7   NR XP_067773814.1 135588 g100235 i0 39.4 1.76326530612245 71 42 85.7 1 243 34 77 147 XP_067773814.1 Ras-related C3 botulinum toxin substrate 1 [Histomonas meleagridis] diamond 432 56.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28704021 28704021 PRJNA611476_P_NODE_85507_length_249_cov_1.340909_g84716_i0 PRJNA611476 85507 249 1.340909 3.33886341 root 1 Root_unresolved Root_unresolved 52 2.23e-5   NR XP_001316485.1 412133 g84716 i0 43.4 1.26506024096386 53 30 63.9 0 88 246 220 272 XP_001316485.1 ribonuclease inhibitor domain-containing protein [Trichomonas vaginalis G3] diamond 315 52 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28735485 28735485 PRJNA611476_P_NODE_70447_length_266_cov_0.943005_g69656_i0 PRJNA611476 70447 266 0.943005 2.5083933 root 1 Root_unresolved Root_unresolved 43.5 0.0246   NR XP_001308032.1 412133 g69656 i0 38.9 2.25563909774436 54 33 60.9 0 165 4 55 108 XP_001308032.1 ribonuclease inhibitor domain-containing protein [Trichomonas vaginalis G3] diamond 600 43.9 0.990888382687927 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30156222 30156222 PRJNA611476_P_NODE_89272_length_248_cov_1.400000_g88481_i0 PRJNA611476 89272 248 1.4 3.472 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.2 3.87e-5   NR XP_001580821.1 412133 g88481 i0 57.9 2.33467741935484 38 16 46 0 205 92 249 286 XP_001580821.1 STKc MAK like domain-containing protein [Trichomonas vaginalis G3] diamond 579 51.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30333411 30333411 PRJNA611476_P_NODE_36072_length_350_cov_1.642599_g35281_i0 PRJNA611476 36072 350 1.642599 5.7490965 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 75.9 1.26e-14   NR CAA61047.1 1144522 g35281 i0 44.1 3.03428571428571 118 51 96 6 3 338 23 131 CAA61047.1 cysteine proteinase 7, partial [Tritrichomonas foetus] diamond 1062 75.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32514967 32514967 PRJNA611476_P_NODE_32959_length_362_cov_2.446367_g32168_i0 PRJNA611476 32959 362 2.446367 8.85584854 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 42.7 0.0306   NR XP_001314726.1 412133 g32168 i0 42.2 0.37292817679558 45 22 37.3 1 185 319 51 91 XP_001314726.1 positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [Trichomonas vaginalis G3] diamond 135 42.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32559703 32559703 PRJNA611476_P_NODE_63919_length_278_cov_1.146341_g63128_i0 PRJNA611476 63919 278 1.146341 3.18682798 root 1 Root_unresolved Root_unresolved 45.8 0.00441   NR XP_001326263.1 412133 g63128 i0 42.9 1.99640287769784 49 28 52.9 0 275 129 304 352 XP_001326263.1 ribonuclease inhibitor domain-containing protein [Trichomonas vaginalis G3] diamond 555 45.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32703709 32703709 PRJNA611476_P_NODE_12580_length_552_cov_3.400835_g11793_i0 PRJNA611476 12580 552 3.400835 18.7726092 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 191 2.71e-58   NR XP_068360038.1 1144522 g11793 i0 56.3 28.3369565217391 174 76 94.6 0 5 526 5 178 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 15642 191 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;