RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA611476" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA611476 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17726204 17726204 PRJNA611476_P_NODE_86834_length_249_cov_0.875000_g86043_i0 PRJNA611476 86834 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|619533717|dbj|AB862005.1| 179883 g86043 i0 99.197 99.8714859437751 249 2 100 0 1 249 530 778 Uncultured Candidatus Saccharibacteria bacterium gene for 16S ribosomal RNA, partial sequence, clone: HHS-08tF06 blastn 24868 449 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium
29606104 29606104 PRJNA611476_P_NODE_82110_length_250_cov_0.870056_g81319_i0 PRJNA611476 82110 250 0.870056 2.17514 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 156 4.9199999999999985e-43   NR MBB1558555.1 2026720 g81319 i0 94 0.996 83 5 99.6 0 2 250 301 383 MBB1558555.1 MFS transporter [Candidatus Saccharibacteria bacterium] diamond 249 156 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32892623 32892623 PRJNA611476_P_NODE_114620_length_242_cov_0.911243_g113829_i0 PRJNA611476 114620 242 0.911243 2.20520806 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 129 3.07e-34   NR HBO64453.1 2026720 g113829 i0 80 1.98347107438017 80 16 99.2 0 2 241 213 292 HBO64453.1 mannosyltransferase [Candidatus Saccharibacteria bacterium] diamond 480 129 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;