RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA611476" and tax_phylum = "Candidatus Latescibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA611476 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13344359 13344359 PRJNA611476_P_NODE_99811_length_246_cov_0.890173_g99020_i0 PRJNA611476 99811 246 0.890173 2.18982558 uncultured Latescibacterota bacterium 199737 Bacteria Bacteria 132 2.77e-26   NTclustered gi|82523633|emb|AJ937675.1| 199737 g99020 i0 84.848 65.3292682926829 132 18 53 2 56 185 2247 2116 Uncultured candidate division WS3 bacterium 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), clone b1bcf1.1.f04.rrna.clone7 blastn 16071 132 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium
14617761 14617761 PRJNA611476_P_NODE_103052_length_245_cov_0.895349_g102261_i0 PRJNA611476 103052 245 0.895349 2.19360505 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 52.8 0.022   NTclustered gi|2893356055|emb|OZ220478.1| 2053570 g102261 i0 100 0.114285714285714 28 0 11 0 33 60 4062685 4062658 MAG: Candidatus Latescibacterota bacterium isolate 1cf545fa-d59a-4aa3-98d5-019dd537838a genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
23541546 23541546 PRJNA611476_P_NODE_15959_length_494_cov_1.292162_g15169_i0 PRJNA611476 15959 494 1.292162 6.38328028 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 54.7 0.013   NTclustered gi|2891482400|emb|OZ220090.1| 2053570 g15169 i0 100 0.0587044534412955 29 0 6 0 141 169 203426 203454 MAG: Candidatus Latescibacterota bacterium isolate 4e2a754f-172e-45f6-b93c-83e01e84db49 genome assembly, chromosome: 2 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;