RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA611476", tax_kingdom = "Pararnavirae" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 4 ✖

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA611476 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7525842 7525842 PRJNA611476_P_NODE_56306_length_292_cov_1.054795_g55515_i0 PRJNA611476 56306 292 1.054795 3.0800014 root 1 Root_unresolved Root_unresolved 531 2.85e-146   NTclustered gi|57547625|tpd|BR000031.1| 10654 g55515 i0 99.315 72.0171232876712 292 2 100 0 1 292 6492 6783 TPA_inf: Rice tungro bacilliform virus orf x, orf y and orf z genes for hypothetical proteins, isolate:ERTBV-C blastn 21029 534 0.99438202247191 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Tungrovirus Tungrovirus oryzae
8800631 8800631 PRJNA611476_P_NODE_24707_length_407_cov_0.772455_g23916_i0 PRJNA611476 24707 407 0.772455 3.14389185 root 1 Root_unresolved Root_unresolved 721 0   NTclustered gi|57547625|tpd|BR000031.1| 10654 g23916 i0 98.762 104.498771498772 404 5 99 0 4 407 6351 5948 TPA_inf: Rice tungro bacilliform virus orf x, orf y and orf z genes for hypothetical proteins, isolate:ERTBV-C blastn 42531 725 0.99448275862069 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Tungrovirus Tungrovirus oryzae
25373914 25373914 PRJNA611476_P_NODE_116720_length_241_cov_0.916667_g115929_i0 PRJNA611476 116720 241 0.916667 2.20916747 Gammaretrovirus 153135 Viruses Viruses 440 3.959999999999999e-119   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g115929 i0 99.585 20.5477178423237 241 1 100 0 1 241 5112 4872 Moloney murine leukemia virus, complete genome blastn 4952 440 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
25374146 25374146 PRJNA611476_P_NODE_34040_length_358_cov_1.350877_g33249_i0 PRJNA611476 34040 358 1.350877 4.83613966 root 1 Root_unresolved Root_unresolved 658 0   NTclustered gi|57547621|tpd|BR000030.1| 10654 g33249 i0 99.721 101.067039106145 358 1 100 0 1 358 4773 4416 TPA_inf: Rice tungro bacilliform virus orf x, orf y and orf z genes for hypothetical proteins, isolate:ERTBV-B blastn 36182 662 0.993957703927492 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Tungrovirus Tungrovirus oryzae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;