RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA611476" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA611476 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27567106 27567106 PRJNA611476_P_NODE_81944_length_250_cov_0.949153_g81153_i0 PRJNA611476 81944 250 0.949153 2.3728825 Pseudomonadati 3379134 Bacteria Bacteria 100 1.08e-22   NR OGQ90744.1 1797895 g81153 i0 56.6 10.956 83 36 99.6 0 250 2 13 95 OGQ90744.1 MAG: hypothetical protein A2289_26095 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 2739 101 0.99009900990099 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
29777291 29777291 PRJNA611476_P_NODE_103231_length_245_cov_0.895349_g102440_i0 PRJNA611476 103231 245 0.895349 2.19360505 Myxococcota 2818505 Bacteria Bacteria 46.2 0.00221   NR MBF0352506.1 2024889 g102440 i0 36.9 1.6530612244898 65 41 79.6 0 244 50 336 400 MBF0352506.1 response regulator [SAR324 cluster bacterium] diamond 405 46.6 0.991416309012876 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
29935456 29935456 PRJNA611476_P_NODE_50071_length_308_cov_0.953191_g49280_i0 PRJNA611476 50071 308 0.953191 2.93582828 Bacillati 1783272 Bacteria Bacteria 106 2.08e-24   NR MDP6329391.1 2024889 g49280 i0 48.1 4.96753246753247 104 51 99.4 2 3 308 296 398 MDP6329391.1 4-coumarate--CoA ligase family protein [SAR324 cluster bacterium] diamond 1530 106 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30743770 30743770 PRJNA611476_P_NODE_87734_length_249_cov_0.875000_g86943_i0 PRJNA611476 87734 249 0.875 2.17875 SAR324 cluster bacterium 2024889 Bacteria Bacteria 125 4.99e-32   NR MBF0288785.1 2024889 g86943 i0 66.3 1 83 28 100 0 249 1 14 96 MBF0288785.1 nucleotide sugar dehydrogenase [SAR324 cluster bacterium] diamond 249 125 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;