RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA610520" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA610520 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
588391 588391 PRJNA610520_S_NODE_30881_length_320_cov_2.238866_g30791_i0 PRJNA610520 30881 320 2.238866 7.1643712 Nannocystaceae bacterium 2545255 Bacteria Bacteria 103 5.51e-23   NR MEZ4453972.1 2545255 g30791 i0 61.1 2.71875 72 28 67.5 0 53 268 632 703 MEZ4453972.1 M13 family metallopeptidase [Nannocystaceae bacterium] diamond 870 103 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
32040064 32040064 PRJNA610520_S_NODE_39118_length_297_cov_3.392857_g39028_i0 PRJNA610520 39118 297 3.392857 10.07678529 Nannocystis exedens 54 Bacteria Bacteria 62.4 6.87e-9   NR WP_096325640.1 54 g39028 i0 66.7 0.424242424242424 42 14 42.4 0 55 180 262 303 WP_096325640.1 hypothetical protein [Nannocystis exedens] diamond 126 62.4 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;