RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA610520" and tax_phylum = "Bacteroidota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA610520 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1864513 1864513 PRJNA610520_S_NODE_71142_length_231_cov_2.063291_g71052_i0 PRJNA610520 71142 231 2.063291 4.76620221 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 427 2.9399999999999998e-115   NTclustered gi|1818223938|gb|CP049329.1| 935222 g71052 i0 100 100.220779220779 231 0 100 0 1 231 2672238 2672468 Flavobacterium sp. Sr18 chromosome, complete genome blastn 23151 427 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18
6966884 6966884 PRJNA610520_S_NODE_71826_length_226_cov_3.143791_g71736_i0 PRJNA610520 71826 226 3.143791 7.10496766 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 407 3.73e-109   NTclustered gi|1818223938|gb|CP049329.1| 935222 g71736 i0 99.115 1 226 2 100 0 1 226 1679428 1679203 Flavobacterium sp. Sr18 chromosome, complete genome blastn 226 407 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18
8241427 8241427 PRJNA610520_S_NODE_29147_length_326_cov_1.545455_g29057_i0 PRJNA610520 29147 326 1.545455 5.0381833 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 575 1.4699999999999996e-159   NTclustered gi|1818223938|gb|CP049329.1| 935222 g29057 i0 98.466 99.6840490797546 326 5 100 0 1 326 2665418 2665093 Flavobacterium sp. Sr18 chromosome, complete genome blastn 32497 575 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18
22824756 22824756 PRJNA610520_S_NODE_26678_length_334_cov_1.475096_g26588_i0 PRJNA610520 26678 334 1.475096 4.92682064 Bacteroidota bacterium 1898104 Bacteria Bacteria 68.2 1.27e-11   NR MCE3279722.1 1898104 g26588 i0 39.8 0.745508982035928 83 42 67.4 1 330 106 75 157 MCE3279722.1 ribosomal protein [Bacteroidota bacterium] diamond 249 68.2 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
27819969 27819969 PRJNA610520_S_NODE_52504_length_267_cov_1.865979_g52414_i0 PRJNA610520 52504 267 1.865979 4.98216393 Bacteroidota 976 Bacteria Bacteria 44.3 0.0132   NR HYF29897.1 1869212 g52414 i0 60.7 1.25842696629213 28 11 31.5 0 263 180 299 326 HYF29897.1 ADP-glyceromanno-heptose 6-epimerase [Chitinophagaceae bacterium] diamond 336 44.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
27996221 27996221 PRJNA610520_S_NODE_42865_length_288_cov_1.702326_g42775_i0 PRJNA610520 42865 288 1.702326 4.90269888 Flavobacterium sp. 239 Bacteria Bacteria 175 5.309999999999999e-54   NR HEY4628803.1 239 g42775 i0 93.8 1 96 6 100 0 288 1 60 155 HEY4628803.1 RNA polymerase sigma factor [Flavobacterium sp.] diamond 288 175 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp.
28546267 28546267 PRJNA610520_S_NODE_55927_length_260_cov_2.679144_g55837_i0 PRJNA610520 55927 260 2.679144 6.9657744 root 1 Root_unresolved Root_unresolved 50.4 1.65e-5   NR WP_337580933.1 454154 g55837 i0 52.8 4.21153846153846 53 20 61.2 1 258 100 67 114 WP_337580933.1 ubiquitin-like protein [Paraprevotella clara] diamond 1095 50.8 0.992125984251969 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella clara
29795679 29795679 PRJNA610520_S_NODE_43511_length_286_cov_3.530516_g43421_i0 PRJNA610520 43511 286 3.530516 10.09727576 Flavimarina sp. Hel_I_48 1392488 Bacteria Bacteria 65.1 4.85e-10   NR WP_031426029.1 1392488 g43421 i0 50.8 2.13986013986014 65 31 68.2 1 35 229 187 250 WP_031426029.1 DNA/RNA non-specific endonuclease [Flavimarina sp. Hel_I_48] diamond 612 65.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavimarina Flavimarina sp. Hel_I_48
30933295 30933295 PRJNA610520_S_NODE_20654_length_356_cov_7.526502_g20564_i0 PRJNA610520 20654 356 7.526502 26.79434712 Crocinitomix catalasitica 184607 Bacteria Bacteria 48.5 0.00113   NR WP_035844478.1 184607 g20564 i0 35.2 0.76685393258427 91 55 74.2 2 345 82 91 180 WP_035844478.1 trypsin-like peptidase domain-containing protein [Crocinitomix catalasitica] diamond 273 48.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Crocinitomix Crocinitomix catalasitica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;