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contig_metadata

31 rows where bioproject = "PRJNA610520" and tax_kingdom = "Pseudomonadati"

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tax_clade 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Pseudomonadati · 31 ✖

bioproject 1

  • PRJNA610520 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
588391 588391 PRJNA610520_S_NODE_30881_length_320_cov_2.238866_g30791_i0 PRJNA610520 30881 320 2.238866 7.1643712 Nannocystaceae bacterium 2545255 Bacteria Bacteria 103 5.51e-23   NR MEZ4453972.1 2545255 g30791 i0 61.1 2.71875 72 28 67.5 0 53 268 632 703 MEZ4453972.1 M13 family metallopeptidase [Nannocystaceae bacterium] diamond 870 103 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
1864513 1864513 PRJNA610520_S_NODE_71142_length_231_cov_2.063291_g71052_i0 PRJNA610520 71142 231 2.063291 4.76620221 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 427 2.9399999999999998e-115   NTclustered gi|1818223938|gb|CP049329.1| 935222 g71052 i0 100 100.220779220779 231 0 100 0 1 231 2672238 2672468 Flavobacterium sp. Sr18 chromosome, complete genome blastn 23151 427 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18
4416008 4416008 PRJNA610520_S_NODE_42404_length_289_cov_1.782407_g42314_i0 PRJNA610520 42404 289 1.782407 5.15115623 Ralstonia pickettii 329 Bacteria Bacteria 503 6.139999999999998e-138   NTclustered gi|2556944802|gb|CP104381.1| 329 g42314 i0 98.592 98.4186851211073 284 4 98 0 1 284 2240175 2240458 Ralstonia pickettii strain MCR chromosome 1, complete sequence blastn 28443 503 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii
4975553 4975553 PRJNA610520_S_NODE_46484_length_280_cov_1.115942_g46394_i0 PRJNA610520 46484 280 1.115942 3.1246376 Psychrobacter 497 Bacteria Bacteria 501 2.13e-137   NTclustered gi|2565764499|gb|CP132595.1| 3064892 g46394 i0 98.929 35.6214285714286 280 3 100 0 1 280 2945658 2945937 Psychrobacter sp. van23A chromosome, complete genome blastn 9974 501 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. van23A
5692006 5692006 PRJNA610520_S_NODE_32745_length_314_cov_11.423237_g32655_i0 PRJNA610520 32745 314 11.423237 35.86896418 Eleftheria terrae 1597781 Bacteria Bacteria 159 1.68e-34   NTclustered gi|2533425405|gb|CP106951.1| 1597781 g32655 i0 82.258 6.45541401273885 186 31 59 2 128 312 4460414 4460598 Eleftheria terrae strain P9846-PB chromosome, complete genome blastn 2027 159 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales   Eleftheria Eleftheria terrae
6251160 6251160 PRJNA610520_S_NODE_37965_length_300_cov_3.361233_g37875_i0 PRJNA610520 37965 300 3.361233 10.083699 Bacteria 2 Bacteria Bacteria 119 2.21e-30   NR MBX9836689.1 2654442 g37875 i0 62.1 2.61 87 33 87 0 6 266 193 279 MBX9836689.1 S-methyl-5-thioribose-1-phosphate isomerase [Silvanigrellaceae bacterium] diamond 783 120 0.991666666666667 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
6966884 6966884 PRJNA610520_S_NODE_71826_length_226_cov_3.143791_g71736_i0 PRJNA610520 71826 226 3.143791 7.10496766 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 407 3.73e-109   NTclustered gi|1818223938|gb|CP049329.1| 935222 g71736 i0 99.115 1 226 2 100 0 1 226 1679428 1679203 Flavobacterium sp. Sr18 chromosome, complete genome blastn 226 407 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18
8241427 8241427 PRJNA610520_S_NODE_29147_length_326_cov_1.545455_g29057_i0 PRJNA610520 29147 326 1.545455 5.0381833 Flavobacterium sp. Sr18 935222 Bacteria Bacteria 575 1.4699999999999996e-159   NTclustered gi|1818223938|gb|CP049329.1| 935222 g29057 i0 98.466 99.6840490797546 326 5 100 0 1 326 2665418 2665093 Flavobacterium sp. Sr18 chromosome, complete genome blastn 32497 575 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. Sr18
8241468 8241468 PRJNA610520_S_NODE_39087_length_297_cov_4.160714_g38997_i0 PRJNA610520 39087 297 4.160714 12.35732058 Sphingomonas leidyi 68569 Bacteria Bacteria 80.5 1.27e-10   NTclustered gi|2814041301|gb|CP170557.1| 68569 g38997 i0 91.379 16.010101010101 58 5 20 0 240 297 1856210 1856153 Sphingomonas leidyi strain UC122_23 chromosome, complete genome blastn 4755 80.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas leidyi
15891430 15891430 PRJNA610520_S_NODE_51573_length_269_cov_1.571429_g51483_i0 PRJNA610520 51573 269 1.571429 4.22714401 Ralstonia pickettii 329 Bacteria Bacteria 475 1.2299999999999999e-129   NTclustered gi|2556944802|gb|CP104381.1| 329 g51483 i0 98.513 99.7323420074349 269 4 100 0 1 269 1156129 1156397 Ralstonia pickettii strain MCR chromosome 1, complete sequence blastn 26828 475 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia pickettii
18440493 18440493 PRJNA610520_S_NODE_50915_length_270_cov_2.345178_g50825_i0 PRJNA610520 50915 270 2.345178 6.3319806 Psychrobacter sp. G 571800 Bacteria Bacteria 200 8.349999999999999e-47   NTclustered gi|521014486|gb|CP006265.1| 571800 g50825 i0 81.526 1.6962962962963 249 41 92 3 1 248 1838348 1838592 Psychrobacter sp. G, complete genome blastn 458 200 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Psychrobacter Psychrobacter sp. G
19715120 19715120 PRJNA610520_S_NODE_72056_length_222_cov_4.114094_g71966_i0 PRJNA610520 72056 222 4.114094 9.13328868 Microvirga ossetica 1882682 Bacteria Bacteria 82.4 2.51e-11   NTclustered gi|1049766302|gb|CP016616.1| 1882682 g71966 i0 80.531 1.36036036036036 113 16 50 5 110 219 1052218 1052327 Microvirga ossetica strain V5/3M, complete sequence. blastn 302 82.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Microvirga Microvirga ossetica
22265697 22265697 PRJNA610520_S_NODE_69738_length_239_cov_2.638554_g69648_i0 PRJNA610520 69738 239 2.638554 6.30614406 Acinetobacter baumannii 470 Bacteria Bacteria 52.8 0.021   NTclustered gi|2470454228|gb|CP113071.1| 470 g69648 i0 100 0.702928870292887 28 0 12 0 162 189 2016407 2016380 Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan chromosome, complete genome blastn 168 52.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii
22824756 22824756 PRJNA610520_S_NODE_26678_length_334_cov_1.475096_g26588_i0 PRJNA610520 26678 334 1.475096 4.92682064 Bacteroidota bacterium 1898104 Bacteria Bacteria 68.2 1.27e-11   NR MCE3279722.1 1898104 g26588 i0 39.8 0.745508982035928 83 42 67.4 1 330 106 75 157 MCE3279722.1 ribosomal protein [Bacteroidota bacterium] diamond 249 68.2 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
23540881 23540881 PRJNA610520_S_NODE_47919_length_276_cov_10.921182_g47829_i0 PRJNA610520 47919 276 10.921182 30.14246232 Geothrix sp. 1962974 Bacteria Bacteria 67.6 9.06e-7   NTclustered gi|2515262989|gb|CP126625.1| 1962974 g47829 i0 93.333 2.64492753623188 45 3 16 0 119 163 117118 117074 MAG: Geothrix sp. isolate L227-G1 chromosome, complete genome blastn 730 67.6 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp.
26605113 26605113 PRJNA610520_S_NODE_70221_length_236_cov_2.834356_g70131_i0 PRJNA610520 70221 236 2.834356 6.68908016 Pleionea sediminis 2569479 Bacteria Bacteria 64.3 5.05e-10   NR WP_144392370.1 2569479 g70131 i0 41.6 2.9364406779661 77 45 97.9 0 6 236 23 99 WP_144392370.1 TatD family hydrolase [Pleionea sediminis] diamond 693 64.3 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Oceanospirillales Pleioneaceae Pleionea Pleionea sediminis
26921962 26921962 PRJNA610520_S_NODE_22622_length_349_cov_1.094203_g22532_i0 PRJNA610520 22622 349 1.094203 3.81876847 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 113 3.18e-28   NR MBP5215296.1 1913988 g22532 i0 60 3.30085959885387 100 39 86 1 347 48 150 248 MBP5215296.1 chaperonin GroEL [Alphaproteobacteria bacterium] diamond 1152 113 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
27819969 27819969 PRJNA610520_S_NODE_52504_length_267_cov_1.865979_g52414_i0 PRJNA610520 52504 267 1.865979 4.98216393 Bacteroidota 976 Bacteria Bacteria 44.3 0.0132   NR HYF29897.1 1869212 g52414 i0 60.7 1.25842696629213 28 11 31.5 0 263 180 299 326 HYF29897.1 ADP-glyceromanno-heptose 6-epimerase [Chitinophagaceae bacterium] diamond 336 44.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium
27838081 27838081 PRJNA610520_S_NODE_47564_length_277_cov_2.882353_g47474_i0 PRJNA610520 47564 277 2.882353 7.98411781 Alphaproteobacteria bacterium 1913988 Bacteria Bacteria 61.2 1.49e-8   NR MCH9845700.1 1913988 g47474 i0 44.6 0.703971119133574 65 36 70.4 0 4 198 89 153 MCH9845700.1 thioredoxin [Alphaproteobacteria bacterium] diamond 195 61.2 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria       Alphaproteobacteria bacterium
27996221 27996221 PRJNA610520_S_NODE_42865_length_288_cov_1.702326_g42775_i0 PRJNA610520 42865 288 1.702326 4.90269888 Flavobacterium sp. 239 Bacteria Bacteria 175 5.309999999999999e-54   NR HEY4628803.1 239 g42775 i0 93.8 1 96 6 100 0 288 1 60 155 HEY4628803.1 RNA polymerase sigma factor [Flavobacterium sp.] diamond 288 175 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp.
28059197 28059197 PRJNA610520_S_NODE_65925_length_245_cov_0.895349_g65835_i0 PRJNA610520 65925 245 0.895349 2.19360505 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 47 4.71e-4   NR WP_395515008.1 251699 g65835 i0 42.1 1.82448979591837 76 42 90.6 1 21 242 48 123 WP_395515008.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] diamond 447 47 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7
28103799 28103799 PRJNA610520_S_NODE_54825_length_262_cov_9.142857_g54735_i0 PRJNA610520 54825 262 9.142857 23.95428534 root 1 Root_unresolved Root_unresolved 41.6 0.0185   NR WP_143213185.1 470 g54735 i0 100 87.9389312977099 20 0 22.9 0 262 203 55 74 WP_143213185.1 hypothetical protein, partial [Acinetobacter baumannii] diamond 23040 41.6 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii
28546267 28546267 PRJNA610520_S_NODE_55927_length_260_cov_2.679144_g55837_i0 PRJNA610520 55927 260 2.679144 6.9657744 root 1 Root_unresolved Root_unresolved 50.4 1.65e-5   NR WP_337580933.1 454154 g55837 i0 52.8 4.21153846153846 53 20 61.2 1 258 100 67 114 WP_337580933.1 ubiquitin-like protein [Paraprevotella clara] diamond 1095 50.8 0.992125984251969 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Paraprevotella Paraprevotella clara
29101289 29101289 PRJNA610520_S_NODE_49028_length_274_cov_2.223881_g48938_i0 PRJNA610520 49028 274 2.223881 6.09343394 Phycisphaerales bacterium 2052180 Bacteria Bacteria 72.8 6.23e-13   NR MCC6971375.1 2052180 g48938 i0 51.2 2.78102189781022 84 36 92 2 7 258 196 274 MCC6971375.1 SPFH domain-containing protein [Phycisphaerales bacterium] diamond 762 72.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
29385489 29385489 PRJNA610520_S_NODE_56649_length_259_cov_1.629032_g56559_i0 PRJNA610520 56649 259 1.629032 4.21919288 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 77 1.7e-15   NR HEV2150017.1 3047548 g56559 i0 45.2 1.92277992277992 84 46 97.3 0 8 259 61 144 HEV2150017.1 thioesterase family protein [Longimicrobiaceae bacterium] diamond 498 77 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
29795679 29795679 PRJNA610520_S_NODE_43511_length_286_cov_3.530516_g43421_i0 PRJNA610520 43511 286 3.530516 10.09727576 Flavimarina sp. Hel_I_48 1392488 Bacteria Bacteria 65.1 4.85e-10   NR WP_031426029.1 1392488 g43421 i0 50.8 2.13986013986014 65 31 68.2 1 35 229 187 250 WP_031426029.1 DNA/RNA non-specific endonuclease [Flavimarina sp. Hel_I_48] diamond 612 65.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavimarina Flavimarina sp. Hel_I_48
29858930 29858930 PRJNA610520_S_NODE_18671_length_365_cov_9.058219_g18581_i0 PRJNA610520 18671 365 9.058219 33.06249935 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 49.3 6.54e-4   NR HCO12561.1 2026742 g18581 i0 35.5 0.624657534246575 76 47 62.5 1 358 131 40 113 HCO12561.1 hypothetical protein [Gemmatimonadota bacterium] diamond 228 49.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30933295 30933295 PRJNA610520_S_NODE_20654_length_356_cov_7.526502_g20564_i0 PRJNA610520 20654 356 7.526502 26.79434712 Crocinitomix catalasitica 184607 Bacteria Bacteria 48.5 0.00113   NR WP_035844478.1 184607 g20564 i0 35.2 0.76685393258427 91 55 74.2 2 345 82 91 180 WP_035844478.1 trypsin-like peptidase domain-containing protein [Crocinitomix catalasitica] diamond 273 48.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Crocinitomicaceae Crocinitomix Crocinitomix catalasitica
31217190 31217190 PRJNA610520_S_NODE_60195_length_252_cov_2.553073_g60105_i0 PRJNA610520 60195 252 2.553073 6.43374396 Gammaproteobacteria bacterium 1913989 Bacteria Bacteria 47.8 6.78e-4   NR RMH17565.1 1913989 g60105 i0 35.7 0.666666666666667 56 36 66.7 0 30 197 336 391 RMH17565.1 MAG: DUF4124 domain-containing protein [Gammaproteobacteria bacterium] diamond 168 47.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria       Gammaproteobacteria bacterium
31723588 31723588 PRJNA610520_S_NODE_61937_length_250_cov_1.056497_g61847_i0 PRJNA610520 61937 250 1.056497 2.6412425 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 42.7 0.0325   NR WP_395569333.1 251699 g61847 i0 44.4 0.756 63 16 74.4 3 54 239 153 197 WP_395569333.1 hypothetical protein, partial [Pseudomonas syringae group genomosp. 7] diamond 189 42.7 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7
32040064 32040064 PRJNA610520_S_NODE_39118_length_297_cov_3.392857_g39028_i0 PRJNA610520 39118 297 3.392857 10.07678529 Nannocystis exedens 54 Bacteria Bacteria 62.4 6.87e-9   NR WP_096325640.1 54 g39028 i0 66.7 0.424242424242424 42 14 42.4 0 55 180 262 303 WP_096325640.1 hypothetical protein [Nannocystis exedens] diamond 126 62.4 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;