RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA610520", tax_clade = "Opisthokonta" and tax_phylum = "Blastocladiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA610520 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17725344 17725344 PRJNA610520_S_NODE_70674_length_233_cov_5.775000_g70584_i0 PRJNA610520 70674 233 5.775 13.45575 Eukaryota 2759 Fungi Fungi 254 5.33e-63   NTclustered gi|11138676|gb|AF264065.1|AF264065 4808 g70584 i0 86.266 97.8497854077253 233 32 100 0 1 233 1230 998 Blastocladiella emersonii calmodulin (CaM) gene, complete cds blastn 22799 254 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii
28103798 28103798 PRJNA610520_S_NODE_44405_length_284_cov_3.360190_g44315_i0 PRJNA610520 44405 284 3.36019 9.5429396 Blastocladiomycota 451459 Fungi Fungi 64.3 6.12e-10   NR KNE63633.1 578462 g44315 i0 65 1.26760563380282 40 14 42.3 0 284 165 191 230 KNE63633.1 hypothetical protein AMAG_08736 [Allomyces macrogynus ATCC 38327] diamond 360 64.3 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
30301789 30301789 PRJNA610520_S_NODE_32772_length_314_cov_6.547718_g32682_i0 PRJNA610520 32772 314 6.547718 20.55983452 Blastocladiella britannica 64508 Fungi Fungi 49.7 1.92e-4   NR KAI9221993.1 64508 g32682 i0 50 1.10828025477707 58 26 54.5 2 287 117 156 211 KAI9221993.1 ras family-domain-containing protein [Blastocladiella britannica] diamond 348 49.7 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;