RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA610520" and tax_clade = "Discoba"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA610520 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22265534 22265534 PRJNA610520_S_NODE_31878_length_317_cov_2.372951_g31788_i0 PRJNA610520 31878 317 2.372951 7.52225467 Seculamonas ecuadoriensis 221724 Root_unresolved Root_unresolved 195 4.66e-45   NTclustered gi|2443276693|gb|OP760431.1| 221724 g31788 i0 89.172 0.495268138801262 157 15 49 2 130 285 1536 1381 Seculamonas ecuadoriensis RNA-splicing ligase RtcB mRNA, complete cds blastn 157 195 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis
27585696 27585696 PRJNA610520_S_NODE_69024_length_241_cov_1.375000_g68934_i0 PRJNA610520 69024 241 1.375 3.31375 Acrasis kona 1008807 Heterolobosea other_Eukaryota 42.4 0.0115   NR KAL0486669.1 1008807 g68934 i0 46.7 0.560165975103734 45 23 54.8 1 11 142 51 95 KAL0486669.1 developmentally-regulated external PM-anchored protein [Acrasis kona] diamond 135 42.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27598955 27598955 PRJNA610520_S_NODE_46184_length_280_cov_3.014493_g46094_i0 PRJNA610520 46184 280 3.014493 8.4405804 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.4 0.00657   NR CAG4719018.1 5763 g46094 i0 33.3 4.07142857142857 87 43 93.2 4 280 20 577 648 CAG4719018.1 unnamed protein product [Naegleria fowleri] diamond 1140 45.8 0.991266375545852 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
30459720 30459720 PRJNA610520_S_NODE_35113_length_308_cov_1.965957_g35023_i0 PRJNA610520 35113 308 1.965957 6.05514756 Acrasis kona 1008807 Heterolobosea other_Eukaryota 66.6 3.18e-10   NR KAL0481617.1 1008807 g35023 i0 44.6 0.633116883116883 65 34 62.3 2 305 114 40 103 KAL0481617.1 histone-lysine N-methyltransferase [Acrasis kona] diamond 195 66.6 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;