RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA609258" and tax_superkingdom = "Archaea"

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tax_phylum 2

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJNA609258 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28090776 28090776 PRJNA609258_P_NODE_58885_length_243_cov_0.917647_g58500_i0 PRJNA609258 58885 243 0.917647 2.22988221 archaeon 1906665 Archaea Archaea 117 5.57e-29   NR MDP2436521.1 1906665 g58500 i0 71.3 1.97530864197531 80 22 98.8 1 4 243 78 156 MDP2436521.1 WD repeat RBAP46/RBAP48/MSI1 family protein [archaeon] diamond 480 117 1 Archaea               archaeon
32546504 32546504 PRJNA609258_P_NODE_59539_length_242_cov_1.840237_g59154_i0 PRJNA609258 59539 242 1.840237 4.45337354 Methanobacteriaceae archaeon 2099680 Archaea Archaea 42 0.0332   NR MDZ4170835.1 2099680 g59154 i0 72 0.309917355371901 25 7 31 0 168 242 1 25 MDZ4170835.1 peptidase [Methanobacteriaceae archaeon] diamond 75 42 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
32609371 32609371 PRJNA609258_P_NODE_52560_length_250_cov_0.881356_g52175_i0 PRJNA609258 52560 250 0.881356 2.20339 Nanobdellota archaeon 2026764 Archaea Archaea 45.4 0.00412   NR MEK6920263.1 2026764 g52175 i0 35.1 0.924 77 44 88.8 4 248 27 29 102 MEK6920263.1 class I tRNA ligase family protein [Nanoarchaeota archaeon] diamond 231 45.4 1 Archaea   Nanobdellati Nanobdellota         Nanobdellota archaeon
32874283 32874283 PRJNA609258_P_NODE_28400_length_352_cov_0.838710_g28015_i0 PRJNA609258 28400 352 0.83871 2.9522592 root 1 Root_unresolved Root_unresolved 79.7 1.33e-14   NR HJJ46856.1 2058474 g28015 i0 65.1 8.30965909090909 63 22 53.7 0 51 239 2 64 HJJ46856.1 phosphoglycerate dehydrogenase [Methanocorpusculum sp.] diamond 2925 79.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;