RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA609258", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA609258 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13341843 13341843 PRJNA609258_P_NODE_51971_length_250_cov_1.757062_g51586_i0 PRJNA609258 51971 250 1.757062 4.392655 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 272 1.6e-68   NTclustered gi|2874254027|emb|OY970352.1| 171953 g51586 i0 86.454 35.836 251 31 100 3 1 250 2366859 2367107 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 8959 272 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
19714359 19714359 PRJNA609258_P_NODE_52916_length_249_cov_1.596591_g52531_i0 PRJNA609258 52916 249 1.596591 3.97551159 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 268 2.06e-67   NTclustered gi|2874254027|emb|OY970352.1| 171953 g52531 i0 86.111 234.172690763052 252 31 100 2 1 249 2368225 2368475 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 58309 268 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
31438891 31438891 PRJNA609258_P_NODE_59816_length_242_cov_0.923077_g59431_i0 PRJNA609258 59816 242 0.923077 2.23384634 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 42 0.0269   NR HSM50386.1 2651171 g59431 i0 33.9 0.731404958677686 59 34 66.9 1 71 232 14 72 HSM50386.1 phage holin family protein [Thermoanaerobaculia bacterium] diamond 177 42 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;