RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA609258" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA609258 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20273737 20273737 PRJNA609258_P_NODE_39056_length_294_cov_1.407240_g38671_i0 PRJNA609258 39056 294 1.40724 4.1372856 root 1 Root_unresolved Root_unresolved 73.1 2.09e-8   NTclustered gi|83721713|gb|AC156444.2| 3067 g38671 i0 100 20.5918367346939 39 0 13 0 223 261 9154 9192 Volvox carteri clone JGIAOBO-25G3, complete sequence blastn 6054 73.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
28185313 28185313 PRJNA609258_P_NODE_26666_length_364_cov_1.072165_g26281_i0 PRJNA609258 26666 364 1.072165 3.9026806 Helicosporidium sp. ATCC 5 1907511 Plants Plants 83.2 4.87e-17   NR KDD75139.1 1291522 g26281 i0 41.8 1.60714285714286 98 56 79.9 1 1 291 14 111 KDD75139.1 hypothetical protein H632_c848p1 [Helicosporidium sp. ATCC 50920] diamond 585 83.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ATCC 50920

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;