RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA609258", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA609258 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3698918 3698918 PRJNA609258_P_NODE_46583_length_263_cov_1.442105_g46198_i0 PRJNA609258 46583 263 1.442105 3.79273615 Termitidicoccus 3126963 Bacteria Bacteria 298 2.79e-76   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g46198 i0 87.17 86.5361216730038 265 31 100 3 1 263 5636883 5636620 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 22759 298 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
12066563 12066563 PRJNA609258_P_NODE_34870_length_314_cov_1.294606_g34485_i0 PRJNA609258 34870 314 1.294606 4.06506284 Luteolibacter sp. AS25 3135776 Bacteria Bacteria 462 1.15e-125   NTclustered gi|2889346039|gb|CP151837.1| 3135776 g34485 i0 93.291 278.850318471338 313 21 99 0 1 313 454493 454805 Luteolibacter sp. AS25 chromosome, complete genome blastn 87559 462 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. AS25
14615852 14615852 PRJNA609258_P_NODE_25672_length_372_cov_1.043478_g25288_i0 PRJNA609258 25672 372 1.043478 3.88173816 Opitutaceae bacterium TAV5 794903 Bacteria Bacteria 407 6.55e-109   NTclustered gi|573471959|gb|CP007053.1| 794903 g25288 i0 87.088 14.1962365591398 364 42 97 5 1 362 2149789 2149429 Opitutaceae bacterium TAV5, complete genome blastn 5281 407 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium TAV5
28627825 28627825 PRJNA609258_P_NODE_59947_length_242_cov_0.923077_g59562_i0 PRJNA609258 59947 242 0.923077 2.23384634 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 70.5 3.4e-12   NR MBK8038596.1 2026800 g59562 i0 46.8 0.979338842975207 79 42 97.9 0 1 237 90 168 MBK8038596.1 sel1 repeat family protein [Verrucomicrobiaceae bacterium] diamond 237 70.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;