RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA609258", tax_clade = "Opisthokonta" and tax_phylum = "Annelida"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Annelida · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA609258 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20989004 20989004 PRJNA609258_P_NODE_19557_length_431_cov_1.784916_g19173_i0 PRJNA609258 19557 431 1.784916 7.69298796 Helobdella robusta 6412 Annelida Annelida 56.5 0.003   NTclustered gi|675890235|ref|XM_009032372.1| 6412 g19173 i0 96.97 0.909512761020882 33 1 8 0 296 328 504 472 Helobdella robusta hypothetical protein partial mRNA blastn 392 56.5 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Rhynchobdellida Glossiphoniidae Helobdella Helobdella robusta
29669173 29669173 PRJNA609258_P_NODE_56530_length_246_cov_0.901734_g56145_i0 PRJNA609258 56530 246 0.901734 2.21826564 Paralvinella palmiformis 53620 Annelida Annelida 44.7 0.00776   NR KAK2161414.1 53620 g56145 i0 69.2 14.5975609756098 39 12 47.6 0 128 244 186 224 KAK2161414.1 hypothetical protein LSH36_117g05105 [Paralvinella palmiformis] diamond 3591 45.1 0.991130820399113 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;