RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA609258", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA609258 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5691252 5691252 PRJNA609258_P_NODE_47505_length_259_cov_1.677419_g47120_i0 PRJNA609258 47505 259 1.677419 4.34451521 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 357 4.46e-94   NTclustered gi|2874253728|emb|OY969570.1| 412054 g47120 i0 91.506 233.679536679537 259 22 100 0 1 259 173841 173583 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 60523 357 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6966282 6966282 PRJNA609258_P_NODE_57506_length_245_cov_0.906977_g57121_i0 PRJNA609258 57506 245 0.906977 2.22209365 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 327 3.28e-85   NTclustered gi|2874253755|emb|OY969695.1| 412054 g57121 i0 91.057 671.6 246 16 99 6 2 245 341813 342054 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 164542 327 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20990044 20990044 PRJNA609258_P_NODE_48577_length_255_cov_1.714286_g48192_i0 PRJNA609258 48577 255 1.714286 4.3714293 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 351 2.04e-92   NTclustered gi|2874253978|emb|OY970303.1| 412054 g48192 i0 91.797 19.6274509803922 256 16 99 5 1 254 3485646 3485898 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 5005 351 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;