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contig_metadata

20 rows where bioproject = "PRJNA608894" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 20 ✖

bioproject 1

  • PRJNA608894 · 20 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
585812 585812 PRJNA608894_P_NODE_58641_length_242_cov_1.579882_g58142_i0 PRJNA608894 58641 242 1.579882 3.82331444 Pyropia yezoensis 2788 Rhodophyta other_Eukaryota 115 8.78e-28   NR AIT70095.1 2788 g58142 i0 62.5 0.991735537190083 80 30 99.2 0 241 2 152 231 AIT70095.1 phosphoenolpyruvate carboxykinase [Pyropia yezoensis] diamond 240 115 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
7524851 7524851 PRJNA608894_P_NODE_20446_length_448_cov_25.349333_g19950_i0 PRJNA608894 20446 448 25.349333 113.56501184 Galdieria yellowstonensis 3028027 Rhodophyta other_Eukaryota 109 1.17e-27   NR KAK4526463.1 3028027 g19950 i0 52.8 0.823660714285714 123 54 81 4 426 64 4 124 KAK4526463.1 hypothetical protein GAYE_SCF24G4379 [Galdieria yellowstonensis] diamond 369 109 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria yellowstonensis
8238719 8238719 PRJNA608894_P_NODE_46987_length_259_cov_1.655914_g46488_i0 PRJNA608894 46987 259 1.655914 4.28881726 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 1.24e-32   NR AAL05459.1 31436 g46488 i0 73.3 11.8725868725869 86 23 99.6 0 258 1 245 330 AAL05459.1 enolase 1, partial [Mastocarpus papillatus] diamond 3075 127 0.992125984251969 Eukaryota Mastocarpus papillatus complex   Rhodophyta Florideophyceae Gigartinales Phyllophoraceae Mastocarpus Mastocarpus papillatus
13339659 13339659 PRJNA608894_P_NODE_43171_length_272_cov_1.251256_g42672_i0 PRJNA608894 43171 272 1.251256 3.40341632 Pyropia vietnamensis 683352 Rhodophyta other_Eukaryota 122 1.6499999999999995e-31   NR GAB0489483.1 683352 g42672 i0 64.4 1.89705882352941 90 32 99.3 0 272 3 190 279 GAB0489483.1 hypothetical protein MMPV_000702 [Pyropia vietnamensis] diamond 516 122 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia vietnamensis
22262565 22262565 PRJNA608894_P_NODE_36178_length_299_cov_2.044248_g35679_i0 PRJNA608894 36178 299 2.044248 6.11230152 Porphyridium purpureum 35688 Rhodophyta other_Eukaryota 127 6.71e-34   NR KAA8497731.1 35688 g35679 i0 70.1 0.77257525083612 77 23 77.3 0 297 67 179 255 KAA8497731.1 Phosphomannomutase [Porphyridium purpureum] diamond 231 127 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
26921941 26921941 PRJNA608894_P_NODE_48642_length_254_cov_1.701657_g48143_i0 PRJNA608894 48642 254 1.701657 4.32220878 Porphyridium purpureum 35688 Rhodophyta other_Eukaryota 50.8 5.77e-5   NR KAA8490618.1 35688 g48143 i0 41.5 2.32677165354331 65 38 76.8 0 5 199 32 96 KAA8490618.1 Siroheme synthase 1 [Porphyridium purpureum] diamond 591 50.8 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
27029984 27029984 PRJNA608894_P_NODE_53982_length_247_cov_0.885057_g53483_i0 PRJNA608894 53982 247 0.885057 2.18609079 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 125 7.459999999999999e-32   NR KAK1863367.1 2788 g53483 i0 85.7 6.87449392712551 70 10 85 0 243 34 310 379 KAK1863367.1 hypothetical protein I4F81_005925 [Pyropia yezoensis] diamond 1698 126 0.992063492063492 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
27111600 27111600 PRJNA608894_P_NODE_21642_length_428_cov_2.411268_g21146_i0 PRJNA608894 21642 428 2.411268 10.32022704 Pyropia yezoensis 2788 Rhodophyta other_Eukaryota 195 5.44e-57   NR AIT70051.1 2788 g21146 i0 67.1 1.9696261682243 140 46 98.1 0 425 6 121 260 AIT70051.1 pyruvate kinase [Pyropia yezoensis] diamond 843 195 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
27409528 27409528 PRJNA608894_P_NODE_48923_length_253_cov_2.161111_g48424_i0 PRJNA608894 48923 253 2.161111 5.46761083 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 46.2 5.04e-4   NR OSX76546.1 2786 g48424 i0 42.6 3.54545454545455 61 30 66.4 2 13 180 45 105 OSX76546.1 hypothetical protein BU14_0185s0008 [Porphyra umbilicalis] diamond 897 46.2 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Porphyra Porphyra umbilicalis
28072322 28072322 PRJNA608894_P_NODE_62085_length_223_cov_4.206667_g61586_i0 PRJNA608894 62085 223 4.206667 9.38086741 Galdieria 83373 Rhodophyta other_Eukaryota 115 3.87e-28   NR GJQ10802.1 83374 g61586 i0 78.1 3.92825112107623 73 16 98.2 0 3 221 253 325 GJQ10802.1 hypothetical protein GpartN1_g2593.t1 [Galdieria partita] diamond 876 115 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria partita
28122371 28122371 PRJNA608894_P_NODE_27085_length_360_cov_2.668990_g26586_i0 PRJNA608894 27085 360 2.66899 9.608364 Gracilariopsis chorda 448386 Rhodophyta other_Eukaryota 69.3 6.74e-11   NR PXF48173.1 448386 g26586 i0 61.4 0.475 57 19 45 1 115 276 458 514 PXF48173.1 Cell division cycle protein 20-like [Gracilariopsis chorda] diamond 171 69.3 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilariopsis Gracilariopsis chorda
28356434 28356434 PRJNA608894_P_NODE_31386_length_325_cov_1.833333_g30887_i0 PRJNA608894 31386 325 1.833333 5.95833225 Fungi 4751 Rhodophyta other_Eukaryota 147 9.999999999999999e-43   NR XP_005707661.1 130081 g30887 i0 67.3 19.4215384615385 101 33 93.2 0 6 308 4 104 XP_005707661.1 40S ribosomal protein S18 [Galdieria sulphuraria] diamond 6312 148 0.993243243243243 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
28672420 28672420 PRJNA608894_P_NODE_18707_length_480_cov_2.412776_g18211_i0 PRJNA608894 18707 480 2.412776 11.5813248 Viridiplantae 33090 Rhodophyta other_Eukaryota 134 9.92e-35   NR AIT76580.1 2788 g18211 i0 53.7 3.84375 123 57 76.9 0 111 479 132 254 AIT76580.1 malate dehydrogenase [Pyropia yezoensis] diamond 1845 135 0.992592592592593 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
29069775 29069775 PRJNA608894_P_NODE_13568_length_620_cov_1.585009_g13090_i0 PRJNA608894 13568 620 1.585009 9.8270558 Rhodosorus marinus 101924 Rhodophyta other_Eukaryota 110 5.47e-27   NR KAJ8901525.1 101924 g13090 i0 58.5 0.396774193548387 82 34 39.7 0 102 347 2 83 KAJ8901525.1 hypothetical protein NDN08_007369 [Rhodosorus marinus] diamond 246 110 1 Eukaryota     Rhodophyta Stylonematophyceae Stylonematales Stylonemataceae Rhodosorus Rhodosorus marinus
29164563 29164563 PRJNA608894_P_NODE_52649_length_248_cov_1.668571_g52150_i0 PRJNA608894 52649 248 1.668571 4.13805608 Pyropia yezoensis 2788 Rhodophyta other_Eukaryota 115 9.53e-28   NR AIT70095.1 2788 g52150 i0 65.9 0.991935483870968 82 28 99.2 0 248 3 134 215 AIT70095.1 phosphoenolpyruvate carboxykinase [Pyropia yezoensis] diamond 246 115 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
29196050 29196050 PRJNA608894_P_NODE_42849_length_273_cov_1.410000_g42350_i0 PRJNA608894 42849 273 1.41 3.8493 Chondrus crispus 2769 Rhodophyta other_Eukaryota 82 1.65e-16   NR XP_005711466.1 2769 g42350 i0 42.9 0.923076923076923 84 48 92.3 0 253 2 70 153 XP_005711466.1 unnamed protein product [Chondrus crispus] diamond 252 82 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
29637565 29637565 PRJNA608894_P_NODE_38810_length_287_cov_2.158879_g38311_i0 PRJNA608894 38810 287 2.158879 6.19598273 Pyropia yezoensis 2788 Rhodophyta other_Eukaryota 116 4.669999999999999e-28   NR AIT70051.1 2788 g38311 i0 59.8 0.961672473867596 92 37 96.2 0 10 285 402 493 AIT70051.1 pyruvate kinase [Pyropia yezoensis] diamond 276 116 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
30933268 30933268 PRJNA608894_P_NODE_48454_length_255_cov_1.252747_g47955_i0 PRJNA608894 48454 255 1.252747 3.19450485 Pyropia yezoensis 2788 Rhodophyta other_Eukaryota 110 5.51e-26   NR AIT70051.1 2788 g47955 i0 62.4 1 85 32 100 0 255 1 402 486 AIT70051.1 pyruvate kinase [Pyropia yezoensis] diamond 255 110 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia yezoensis
31312397 31312397 PRJNA608894_P_NODE_35595_length_302_cov_2.689956_g35096_i0 PRJNA608894 35595 302 2.689956 8.12366712 Rhodosorus marinus 101924 Rhodophyta other_Eukaryota 93.2 2.0600000000000001e-22   NR KAJ8905469.1 101924 g35096 i0 50.6 2.43377483443709 79 39 78.5 0 30 266 9 87 KAJ8905469.1 hypothetical protein NDN08_001976 [Rhodosorus marinus] diamond 735 93.2 1 Eukaryota     Rhodophyta Stylonematophyceae Stylonematales Stylonemataceae Rhodosorus Rhodosorus marinus
31470768 31470768 PRJNA608894_P_NODE_43676_length_270_cov_1.563452_g43177_i0 PRJNA608894 43676 270 1.563452 4.2213204 Gracilaria domingensis 172961 Rhodophyta other_Eukaryota 52.8 1.56e-5   NR KAI0563915.1 172961 g43177 i0 33.3 1 90 57 97.8 2 7 270 83 171 KAI0563915.1 glycine dehydrogenase (decarboxylating) [Gracilaria domingensis] diamond 270 52.8 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilaria Gracilaria domingensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;