RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA608894" and tax_phylum = "Candidatus Altimarinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA608894 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14614229 14614229 PRJNA608894_P_NODE_27472_length_357_cov_1.257042_g26973_i0 PRJNA608894 27472 357 1.257042 4.48763994 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 292 1.83e-74   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g26973 i0 88.75 3.27731092436975 240 25 67 1 118 357 1251901 1252138 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 1170 292 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
14614344 14614344 PRJNA608894_P_NODE_32972_length_315_cov_1.268595_g32473_i0 PRJNA608894 32972 315 1.268595 3.99607425 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 213 1.28e-50   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g32473 i0 81.159 0.876190476190476 276 42 86 7 6 276 32264 31994 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 276 213 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
27743792 27743792 PRJNA608894_P_NODE_48464_length_255_cov_1.214286_g47965_i0 PRJNA608894 48464 255 1.214286 3.0964293 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 120 8.86e-33   NR MBW7954340.1 2044595 g47965 i0 85.1 1.74117647058824 74 11 87.1 0 255 34 57 130 MBW7954340.1 30S ribosomal protein S9 [Candidatus Altimarinota bacterium] diamond 444 120 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;