RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA608894", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA608894 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10790161 10790161 PRJNA608894_P_NODE_7729_length_988_cov_3.607650_g7329_i0 PRJNA608894 7729 988 3.60765 35.643582 Pseudodesulfovibrio piezophilus 879567 Bacteria Bacteria 69.4 9.94e-7   NTclustered gi|451894361|emb|FO203427.1| 1322246 g7329 i0 78.992 2.80668016194332 119 11 11 10 112 220 2362018 2361904 Desulfovibrio piezophilus C1TLV30 complete genome blastn 2773 69.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio piezophilus
22262597 22262597 PRJNA608894_P_NODE_38098_length_290_cov_1.705069_g37599_i0 PRJNA608894 38098 290 1.705069 4.9447001 Geobacter sp. FeAm09 2597769 Bacteria Bacteria 285 2.43e-72   NTclustered gi|1735471693|gb|CP042466.1| 2597769 g37599 i0 84.775 385.258620689655 289 39 100 5 1 287 692020 692305 Geobacter sp. FeAm09 chromosome, complete genome blastn 111725 285 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. FeAm09
27459478 27459478 PRJNA608894_P_NODE_8283_length_933_cov_2.708140_g7869_i0 PRJNA608894 8283 933 2.70814 25.2669462 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 72.4 6.1e-11   NR GJM17643.1 2202153 g7869 i0 33.8 0.418006430868167 130 75 40.5 5 899 522 91 213 GJM17643.1 MAG: hypothetical protein DHS20C13_29700 [Thermodesulfobacteriota bacterium] diamond 390 72.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29574553 29574553 PRJNA608894_P_NODE_18250_length_489_cov_3.487981_g17754_i0 PRJNA608894 18250 489 3.487981 17.05622709 uncultured Desulfuromusa sp. 219183 Bacteria Bacteria 49.7 0.00151   NR WP_321391052.1 219183 g17754 i0 38.6 0.429447852760736 70 42 42.9 1 392 183 325 393 WP_321391052.1 PEP-CTERM-box response regulator transcription factor [uncultured Desulfuromusa sp.] diamond 210 49.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Desulfuromusa uncultured Desulfuromusa sp.
29764038 29764038 PRJNA608894_P_NODE_23091_length_407_cov_1.610778_g22594_i0 PRJNA608894 23091 407 1.610778 6.55586646 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 54.7 6.96e-6   NR GJM17643.1 2202153 g22594 i0 39.2 0.582309582309582 79 47 57.5 1 374 141 134 212 GJM17643.1 MAG: hypothetical protein DHS20C13_29700 [Thermodesulfobacteriota bacterium] diamond 237 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
31438875 31438875 PRJNA608894_P_NODE_4296_length_1504_cov_2.380154_g4036_i0 PRJNA608894 4296 1504 2.380154 35.79751616 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 56.2 6e-5   NR GJM17643.1 2202153 g4036 i0 34.2 0.157579787234043 79 51 15.6 1 1501 1268 134 212 GJM17643.1 MAG: hypothetical protein DHS20C13_29700 [Thermodesulfobacteriota bacterium] diamond 237 56.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
32451590 32451590 PRJNA608894_P_NODE_51699_length_249_cov_1.579545_g51200_i0 PRJNA608894 51699 249 1.579545 3.93306705 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 59.7 4.16e-8   NR HAO22905.1 2049433 g51200 i0 36.3 0.963855421686747 80 51 96.4 0 3 242 293 372 HAO22905.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 240 59.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
32559677 32559677 PRJNA608894_P_NODE_46479_length_261_cov_1.271277_g45980_i0 PRJNA608894 46479 261 1.271277 3.31803297 Bacteria 2 Bacteria Bacteria 103 2.52e-23   NR PLX86992.1 892 g45980 i0 57 37.5632183908046 86 37 98.9 0 3 260 496 581 PLX86992.1 MAG: endopeptidase La [Desulfuromonas sp.] diamond 9804 103 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;