RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA608894", tax_kingdom = "Bacillati" and tax_phylum = "Cyanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA608894 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5689218 5689218 PRJNA608894_P_NODE_39725_length_284_cov_1.876777_g39226_i0 PRJNA608894 39725 284 1.876777 5.33004668 Synechocystis 1142 Bacteria Bacteria 125 3.86e-35   NR MEB3228129.1 1143 g39226 i0 76.9 1.64788732394366 78 18 82.4 0 3 236 10 87 MEB3228129.1 peptidylprolyl isomerase [Synechocystis sp.] diamond 468 125 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Merismopediaceae Synechocystis Synechocystis sp.
23537874 23537874 PRJNA608894_P_NODE_34639_length_307_cov_2.572650_g34140_i0 PRJNA608894 34639 307 2.57265 7.8980355 Prochlorococcus sp. MIT 1223 3096217 Bacteria Bacteria 65.8 3.68e-6   NTclustered gi|2625929803|gb|CP139303.1| 3096217 g34140 i0 95.122 0.133550488599349 41 2 13 0 248 288 1693239 1693199 Prochlorococcus sp. MIT 1223 chromosome, complete genome blastn 41 65.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus sp. MIT 1223
26700067 26700067 PRJNA608894_P_NODE_13401_length_626_cov_3.663653_g12924_i0 PRJNA608894 13401 626 3.663653 22.93446778 Cyanobacteriota bacterium 2847862 Bacteria Bacteria 52.4 4.66e-4   NR MDY6786232.1 2847862 g12924 i0 34.4 0.460063897763578 96 55 42.2 2 362 625 61 156 MDY6786232.1 CAP domain-containing protein [Cyanobacteriota bacterium] diamond 288 52.4 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         Cyanobacteriota bacterium
31217167 31217167 PRJNA608894_P_NODE_50775_length_250_cov_1.401130_g50276_i0 PRJNA608894 50775 250 1.40113 3.502825 Thermosynechococcus vestitus BP-1 197221 Bacteria Bacteria 76.3 2.82e-15   NR BAC08550.1 197221 g50276 i0 92.5 1.44 40 3 48 0 131 250 1 40 BAC08550.1 reverse transcriptase [Thermosynechococcus vestitus BP-1] diamond 360 76.3 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Acaryochloridales Thermosynechococcaceae Thermosynechococcus Thermosynechococcus vestitus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;