RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA608894", tax_clade = "SAR86 cluster" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 1 ✖

bioproject 1

  • PRJNA608894 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32829826 32829826 PRJNA608894_P_NODE_27140_length_360_cov_1.348432_g26641_i0 PRJNA608894 27140 360 1.348432 4.8543552 SAR86 cluster bacterium 2030880 Bacteria Bacteria 116 2.17e-28   NR URQ65759.1 2030880 g26641 i0 59.6 1.50833333333333 89 36 74.2 0 356 90 68 156 URQ65759.1 FAD-dependent oxidoreductase [SAR86 cluster bacterium] diamond 543 116 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;