RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA608894", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA608894 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27093253 27093253 PRJNA608894_P_NODE_29682_length_338_cov_1.739623_g29183_i0 PRJNA608894 29682 338 1.739623 5.87992574 root 1 Root_unresolved Root_unresolved 47.8 2.8e-4   NR MCB1084366.1 34094 g29183 i0 41.1 1.47337278106509 56 33 49.7 0 313 146 46 101 MCB1084366.1 hypothetical protein [Simkania sp.] diamond 498 47.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
28419882 28419882 PRJNA608894_P_NODE_18666_length_481_cov_1.833333_g18170_i0 PRJNA608894 18666 481 1.833333 8.81833173 Bacteria 2 Bacteria Bacteria 123 7.7e-30   NR MFT5050156.1 2047757 g18170 i0 45 5.75051975051975 129 71 80.5 0 84 470 259 387 MFT5050156.1 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein [Chlamydiales bacterium] diamond 2766 124 0.991935483870968 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32198220 32198220 PRJNA608894_P_NODE_18798_length_478_cov_31.629630_g18302_i0 PRJNA608894 18798 478 31.62963 151.1896314 Chlamydiales bacterium 2047757 Bacteria Bacteria 111 9e-28   NR MCP5470420.1 2047757 g18302 i0 49.2 1.53138075313808 124 62 77.2 1 473 105 1 124 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 732 111 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;