RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA608894", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA608894 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10790016 10790016 PRJNA608894_P_NODE_55709_length_245_cov_1.220930_g55210_i0 PRJNA608894 55709 245 1.22093 2.9912785 Trichomonas 5721 Parabasalia other_Eukaryota 112 6.62e-28   NR AAD45335.1 5722 g55210 i0 66.7 1.98367346938776 81 27 99.2 0 1 243 184 264 AAD45335.1 enolase 2, partial [Trichomonas vaginalis] diamond 486 112 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27819965 27819965 PRJNA608894_P_NODE_39204_length_286_cov_1.446009_g38705_i0 PRJNA608894 39204 286 1.446009 4.13558574 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 86.3 1.11e-17   NR XP_067768754.1 135588 g38705 i0 50.6 9.23076923076923 85 37 88.1 2 2 253 177 257 XP_067768754.1 CMGC family protein kinase [Histomonas meleagridis] diamond 2640 87 0.991954022988506 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32071613 32071613 PRJNA608894_P_NODE_50398_length_251_cov_0.865169_g49899_i0 PRJNA608894 50398 251 0.865169 2.17157419 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 45.8 0.00333   NR XP_001307012.1 412133 g49899 i0 37.9 2.37848605577689 66 39 78.9 1 233 36 134 197 XP_001307012.1 regulation of choline O-acetyltransferase protein [Trichomonas vaginalis G3] diamond 597 45.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;