RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA608894", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA608894 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27553785 27553785 PRJNA608894_P_NODE_11024_length_735_cov_8.593656_g10560_i0 PRJNA608894 11024 735 8.593656 63.1633716 Giardia intestinalis assemblage B 1394984 Fornicata other_Eukaryota 50.1 0.00216   NR KWX14910.1 1394984 g10560 i0 44.9 0.6 69 33 28.2 3 537 331 105 168 KWX14910.1 Variant-specific surface protein [Giardia intestinalis assemblage B] diamond 441 50.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
29385463 29385463 PRJNA608894_P_NODE_38609_length_288_cov_1.772093_g38110_i0 PRJNA608894 38609 288 1.772093 5.10362784 Giardia intestinalis assemblage B 1394984 Fornicata other_Eukaryota 45.1 0.00917   NR KWX12540.1 1394984 g38110 i0 37.7 2.84375 69 40 70.8 2 287 84 316 382 KWX12540.1 Variant-specific surface protein [Giardia intestinalis assemblage B] diamond 819 45.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
31280751 31280751 PRJNA608894_P_NODE_34735_length_307_cov_1.316239_g34236_i0 PRJNA608894 34735 307 1.316239 4.04085373 Giardia muris 5742 Fornicata other_Eukaryota 59.7 8.8e-8   NR TNJ29401.1 5742 g34236 i0 41.1 0.713355048859935 73 37 68.4 3 87 296 316 385 TNJ29401.1 High cysteine membrane protein [Giardia muris] diamond 219 59.7 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
32640574 32640574 PRJNA608894_P_NODE_45760_length_263_cov_1.621053_g45261_i0 PRJNA608894 45760 263 1.621053 4.26336939 Giardia intestinalis 5741 Fornicata other_Eukaryota 47.4 0.00111   NR ESU34884.1 5741 g45261 i0 39.1 2.24714828897338 69 23 75.3 4 198 1 344 396 ESU34884.1 Variant-specific surface protein [Giardia intestinalis] diamond 591 47.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;