RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA608894", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA608894 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29543115 29543115 PRJNA608894_P_NODE_29690_length_338_cov_1.649057_g29191_i0 PRJNA608894 29690 338 1.649057 5.57381266 Chlorobiota bacterium 2268192 Bacteria Bacteria 226 1.38e-70   NR NPA07599.1 2268192 g29191 i0 99.1 0.994082840236686 112 1 99.4 0 336 1 88 199 NPA07599.1 hypothetical protein [Chlorobiota bacterium] diamond 336 226 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
32464624 32464624 PRJNA608894_P_NODE_54419_length_246_cov_2.716763_g53920_i0 PRJNA608894 54419 246 2.716763 6.68323698 Pseudomonadati 3379134 Bacteria Bacteria 87.8 3.59e-18   NR NPA07599.1 2268192 g53920 i0 97.4 1.85365853658537 38 1 46.3 0 115 2 1 38 NPA07599.1 hypothetical protein [Chlorobiota bacterium] diamond 456 87.8 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;