RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA608894", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA608894 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4413435 4413435 PRJNA608894_P_NODE_59624_length_241_cov_1.773810_g59125_i0 PRJNA608894 59624 241 1.77381 4.2748821 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 351 1.91e-92   NTclustered gi|1950821269|gb|CP066696.1| 2026720 g59125 i0 92.946 15.3236514522822 241 17 100 0 1 241 799689 799929 Candidatus Saccharibacteria bacterium isolate NC_groundwater_1927_Pr3_S-0.2um_48_6 chromosome blastn 3693 351 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
6963922 6963922 PRJNA608894_P_NODE_46646_length_260_cov_2.026738_g46147_i0 PRJNA608894 46646 260 2.026738 5.2695188 Candidatus Saccharibacteria bacterium TM7i 2980174 Bacteria Bacteria 353 5.8e-93   NTclustered gi|2306681518|gb|CP075337.1| 2980174 g46147 i0 91.188 155.969230769231 261 21 100 2 1 260 668329 668070 Candidatus Saccharibacteria bacterium TM7i chromosome, complete genome blastn 40552 353 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium TM7i
24811842 24811842 PRJNA608894_P_NODE_42840_length_273_cov_1.455000_g42341_i0 PRJNA608894 42840 273 1.455 3.97215 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 372 1.69e-98   NTclustered gi|1958075319|gb|CP064995.1| 2026720 g42341 i0 91.273 66.4652014652015 275 20 100 4 1 273 693839 693567 Candidatus Saccharibacteria bacterium isolate Hjor_18-Q3-R7-51_MAXAC.102_uni chromosome, complete genome blastn 18145 372 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32338161 32338161 PRJNA608894_P_NODE_54919_length_246_cov_0.890173_g54420_i0 PRJNA608894 54919 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 103 5.1999999999999985e-24   NR OJU87479.1 1895829 g54420 i0 89.1 1.34146341463415 55 6 67.1 0 246 82 377 431 OJU87479.1 MAG: GTP1/OBG sub domain protein [Candidatus Saccharibacteria bacterium 49-20] diamond 330 103 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 49-20

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;