RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA608660", tax_phylum = "Thermoplasmatota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA608660 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1860683 1860683 PRJNA608660_P_NODE_36222_length_203_cov_4.051948_g35866_i0 PRJNA608660 36222 203 4.051948 8.22545444 Methanomethylophilus alvi 1291540 Archaea Archaea 331 2.03e-86   NTclustered gi|1721134198|emb|LR699000.1| 1291540 g35866 i0 99.451 8.04926108374384 182 1 90 0 12 193 306873 307054 Candidatus Methanomethylophilus alvus isolate MGYG-HGUT-02456 genome assembly, chromosome: 1 blastn 1634 331 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus alvi
6963074 6963074 PRJNA608660_P_NODE_38826_length_192_cov_13.818182_g38470_i0 PRJNA608660 38826 192 13.818182 26.53090944 Methanomethylophilus alvi 1291540 Archaea Archaea 320 4.1e-83   NTclustered gi|1721134198|emb|LR699000.1| 1291540 g38470 i0 98.883 1.86458333333333 179 2 93 0 1 179 307432 307610 Candidatus Methanomethylophilus alvus isolate MGYG-HGUT-02456 genome assembly, chromosome: 1 blastn 358 320 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus alvi
12064216 12064216 PRJNA608660_P_NODE_45330_length_169_cov_2.600000_g44973_i0 PRJNA608660 45330 169 2.6 4.394 Methanomethylophilus alvi 1291540 Archaea Archaea 283 4.6e-72   NTclustered gi|1721134198|emb|LR699000.1| 1291540 g44973 i0 98.742 88.887573964497 159 2 94 0 5 163 284795 284953 Candidatus Methanomethylophilus alvus isolate MGYG-HGUT-02456 genome assembly, chromosome: 1 blastn 15022 283 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus alvi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;