RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA608660" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA608660 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24810845 24810845 PRJNA608660_P_NODE_15680_length_368_cov_1.583072_g15326_i0 PRJNA608660 15680 368 1.583072 5.82570496 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 148 4.33e-31   NTclustered gi|160358922|gb|EU252544.1| 88456 g15326 i0 83.537 12.2717391304348 164 22 45 5 12 175 1516 1674 Cyclospora cayetanensis 28S large subunit ribosomal RNA gene, partial sequence blastn 4516 148 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
28027748 28027748 PRJNA608660_P_NODE_37025_length_200_cov_1.476821_g36669_i0 PRJNA608660 37025 200 1.476821 2.953642 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 42 0.0408   NR XP_013253311.1 5801 g36669 i0 38.3 0.705 47 29 70.5 0 56 196 366 412 XP_013253311.1 hypothetical protein, conserved [Eimeria acervulina] diamond 141 42 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;