RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA608660", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 10 ✖

tax_kingdom 1

  • Metazoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA608660 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2422227 2422227 PRJNA608660_P_NODE_43662_length_175_cov_1.373016_g43305_i0 PRJNA608660 43662 175 1.373016 2.402778 Metazoa 33208 Nematoda Nematoda 311 2.2e-80   NTclustered gi|109390598|emb|AM039747.1| 6339 g43305 i0 99.415 97.52 171 1 98 0 5 175 977 807 Heligmosomoides polygyrus 28S rRNA gene blastn 17066 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
8799845 8799845 PRJNA608660_P_NODE_46527_length_167_cov_1.940678_g46170_i0 PRJNA608660 46527 167 1.940678 3.24093226 Rhabditida 6236 Nematoda Nematoda 279 5.9e-71   NTclustered gi|2727613736|gb|PP763266.1| 6289 g46170 i0 98.125 95.8083832335329 160 3 96 0 1 160 1111 952 Haemonchus contortus isolate Gorlice region small subunit ribosomal RNA gene, partial sequence blastn 16000 279 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
11350324 11350324 PRJNA608660_P_NODE_20789_length_307_cov_4.058140_g20433_i0 PRJNA608660 20789 307 4.05814 12.4584898 Rhabditida 6236 Nematoda Nematoda 457 5.200000000000001e-124   NTclustered gi|482677747|gb|KC522713.1| 55785 g20433 i0 98.462 93.3127035830619 260 3 95 1 34 292 1293 1552 Panagrolaimus sp. PS1159 small subunit ribosomal RNA gene, complete sequence blastn 28647 457 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1159
15887573 15887573 PRJNA608660_P_NODE_27233_length_253_cov_1.274510_g26877_i0 PRJNA608660 27233 253 1.27451 3.2245103 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.023   NTclustered gi|687865451|emb|LK927650.1| 6239 g26877 i0 96.875 0.379446640316206 32 0 13 1 222 253 164094 164064 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000107 blastn 96 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16449547 16449547 PRJNA608660_P_NODE_11233_length_444_cov_6.154430_g10886_i0 PRJNA608660 11233 444 6.15443 27.3256692 Rhabditida 6236 Nematoda Nematoda 599 1.2199999999999995e-166   NTclustered gi|109390598|emb|AM039747.1| 6339 g10886 i0 99.694 96.5427927927928 327 1 97 0 105 431 1976 2302 Heligmosomoides polygyrus 28S rRNA gene blastn 42865 599 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
16449566 16449566 PRJNA608660_P_NODE_15553_length_369_cov_9.875000_g15199_i0 PRJNA608660 15553 369 9.875 36.43875 Heligmosomidae 126396 Nematoda Nematoda 597 3.589999999999999e-166   NTclustered gi|109390571|emb|AJ920355.1| 6339 g15199 i0 99.099 87.4092140921409 333 2 90 1 27 358 1 333 Heligmosomoides polygyrus 18S rRNA gene blastn 32254 597 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
17162382 17162382 PRJNA608660_P_NODE_25694_length_264_cov_2.265116_g25338_i0 PRJNA608660 25694 264 2.265116 5.97990624 Panagrolaimus sp. R18 446300 Nematoda Nematoda 326 1.29e-84   NTclustered gi|148614849|gb|EF417146.1| 446300 g25338 i0 98.387 49.1439393939394 186 1 100 2 1 186 256 73 Panagrolaimus sp. R18 large subunit ribosomal RNA gene, partial sequence blastn 12974 326 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. R18
22824231 22824231 PRJNA608660_P_NODE_21558_length_299_cov_18.168000_g21202_i0 PRJNA608660 21558 299 18.168 54.32232 Heligmosomoides 6338 Nematoda Nematoda 507 4.94e-139   NTclustered gi|11494162|gb|AF209998.1| 243955 g21202 i0 100 91.6387959866221 274 0 92 0 12 285 30 303 Nematospiroides dubius 28S ribosomal RNA gene, partial sequence blastn 27400 507 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
28659271 28659271 PRJNA608660_P_NODE_49987_length_162_cov_0.884956_g49630_i0 PRJNA608660 49987 162 0.884956 1.43362872 Brugia malayi 6279 Nematoda Nematoda 55.1 1.24e-8   NR CDP91226.1 6279 g49630 i0 69.4 0.666666666666667 36 11 66.7 0 15 122 4 39 CDP91226.1 Bm117, partial [Brugia malayi] diamond 108 55.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
31502429 31502429 PRJNA608660_P_NODE_41296_length_183_cov_2.350746_g40939_i0 PRJNA608660 41296 183 2.350746 4.30186518 Parelaphostrongylus tenuis 148309 Nematoda Nematoda 84 4.94e-17   NR KAJ1373127.1 148309 g40939 i0 76.3 0.967213114754098 59 14 96.7 0 2 178 800 858 KAJ1373127.1 hypothetical protein KIN20_035463 [Parelaphostrongylus tenuis] diamond 177 84 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Parelaphostrongylus Parelaphostrongylus tenuis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;