RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA608660", tax_kingdom = "Fungi" and tax_phylum = "Mucoromycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA608660 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4975055 4975055 PRJNA608660_P_NODE_31224_length_228_cov_2.486034_g30868_i0 PRJNA608660 31224 228 2.486034 5.66815752 Eukaryota 2759 Fungi Fungi 422 1.34e-113   NTclustered gi|379318866|gb|JN974022.1| 4846 g30868 i0 100 100 228 0 100 0 1 228 857 1084 Rhizopus stolonifer strain ss8 18S ribosomal RNA gene, partial sequence blastn 22800 422 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
12625939 12625939 PRJNA608660_P_NODE_30830_length_230_cov_576.425414_g30474_i0 PRJNA608660 30830 230 576.425414 1325.7784522 Fungi 4751 Fungi Fungi 379 8.289999999999998e-101   NTclustered gi|658131632|emb|HF968958.1| 4874 g30474 i0 100 131.817391304348 205 0 89 0 12 216 2196 1992 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 30318 379 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita
13338658 13338658 PRJNA608660_P_NODE_15571_length_369_cov_3.990625_g15217_i0 PRJNA608660 15571 369 3.990625 14.72540625 Lichtheimia corymbifera 42458 Fungi Fungi 185 3.31e-42   NTclustered gi|225131089|gb|FJ345350.1| 42458 g15217 i0 85.393 38.4959349593496 178 26 48 0 59 236 3387 3210 Mycocladus corymbiferus strain ATCC 14058 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14205 185 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia corymbifera
30504071 30504071 PRJNA608660_P_NODE_22813_length_288_cov_2.610879_g22457_i0 PRJNA608660 22813 288 2.610879 7.51933152 Eukaryota 2759 Fungi Fungi 55.5 1.92e-6   NR CEG77792.1 58291 g22457 i0 43.8 3.53125 64 36 66.7 0 205 14 112 175 CEG77792.1 Putative Alanyl-tRNA synthetase [Rhizopus microsporus] diamond 1017 55.5 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus microsporus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;