RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA608660", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA608660 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1146994 1146994 PRJNA608660_P_NODE_31341_length_227_cov_18.876404_g30985_i0 PRJNA608660 31341 227 18.876404 42.84943708 Thermodesulfobacteriota 200940 Bacteria Bacteria 305 1.41e-78   NTclustered gi|82523912|emb|AJ937768.1| 34034 g30985 i0 93.269 206.550660792952 208 13 91 1 15 221 541 334 Uncultured delta proteobacterium fosmid clone b1bf1.1.d04 blastn 46887 305 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
9513110 9513110 PRJNA608660_P_NODE_32448_length_222_cov_0.971098_g32092_i0 PRJNA608660 32448 222 0.971098 2.15583756 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 222 1.42e-53   NTclustered gi|297180392|gb|GU474842.1| 710820 g32092 i0 84.821 15.7612612612613 224 31 100 3 1 222 13535 13757 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 3499 222 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
20273458 20273458 PRJNA608660_P_NODE_50876_length_153_cov_12.326923_g50519_i0 PRJNA608660 50876 153 12.326923 18.86019219 Bacteria 2 Bacteria Bacteria 241 2.49e-59   NTclustered gi|283463612|gb|GU230393.1| 34034 g50519 i0 99.248 87.1764705882353 133 1 87 0 12 144 657 789 Uncultured delta proteobacterium clone ARTE12_241 16S ribosomal RNA gene, partial sequence blastn 13338 241 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;