contig_metadata
45 rows where bioproject = "PRJNA608660" and tax_clade = "core chlorophytes"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 584455 | 584455 | PRJNA608660_P_NODE_11661_length_435_cov_6.717617_g11314_i0 | PRJNA608660 | 11661 | 435 | 6.717617 | 29.22163395 | Trebouxia aggregata | 160068 | Plants | Plants | 752 | 0 | NTclustered | gi|162134245|gb|EU123948.1| | 160068 | g11314 | i0 | 99.048 | 86.4896551724138 | 420 | 3 | 96 | 1 | 9 | 427 | 6455 | 6036 | Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial | blastn | 37623 | 752 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 584716 | 584716 | PRJNA608660_P_NODE_3781_length_724_cov_14.162963_g3522_i0 | PRJNA608660 | 3781 | 724 | 14.162963 | 102.53985212 | Trebouxia lynnae | 1825957 | Plants | Plants | 1157 | 0 | NTclustered | gi|1812100161|ref|NC_045839.1| | 1825957 | g3522 | i0 | 96.695 | 88.2734806629834 | 696 | 22 | 96 | 1 | 23 | 718 | 179619 | 178925 | Trebouxia sp. TR9 chloroplast, partial genome | blastn | 63910 | 1157 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia lynnae | |
| 1147057 | 1147057 | PRJNA608660_P_NODE_49421_length_162_cov_3.654867_g49064_i0 | PRJNA608660 | 49421 | 162 | 3.654867 | 5.92088454 | Chlorophyta | 3041 | Plants | Plants | 224 | 2.7e-54 | NTclustered | gi|11528479|gb|AY008845.1| | 142647 | g49064 | i0 | 97.692 | 90.7037037037037 | 130 | 3 | 100 | 0 | 33 | 162 | 1216 | 1345 | Elakatothrix viridis 26S ribosomal RNA gene, partial sequence | blastn | 14694 | 224 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Sphaeropleales | Cylindrocapsaceae | Fusola | Fusola viridis | |
| 1860608 | 1860608 | PRJNA608660_P_NODE_28102_length_247_cov_1.717172_g27746_i0 | PRJNA608660 | 28102 | 247 | 1.717172 | 4.24141484 | Trebouxia sp. SL0000003 | 3350044 | Plants | Plants | 156 | 1.65e-33 | NTclustered | gi|2917929627|emb|OZ234915.1| | 3350044 | g27746 | i0 | 93.333 | 0.425101214574899 | 105 | 7 | 43 | 0 | 1 | 105 | 1161027 | 1161131 | Trebouxia sp. SL0000003 genome assembly, chromosome: 10 | blastn | 105 | 156 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. SL0000003 | |
| 1860634 | 1860634 | PRJNA608660_P_NODE_31502_length_227_cov_1.168539_g31146_i0 | PRJNA608660 | 31502 | 227 | 1.168539 | 2.65258353 | Diplosphaera sundellii | 3135960 | Plants | Plants | 248 | 2.3999999999999997e-61 | NTclustered | gi|2878821371|gb|PQ563290.1| | 3135960 | g31146 | i0 | 100 | 44.2775330396476 | 134 | 0 | 76 | 0 | 40 | 173 | 19699 | 19832 | Diplosphaera sundellii mitochondrion, complete genome | blastn | 10051 | 248 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Prasiolales | Stichococcaceae | Diplosphaera | Diplosphaera sundellii | |
| 1860657 | 1860657 | PRJNA608660_P_NODE_33722_length_215_cov_2.000000_g33366_i0 | PRJNA608660 | 33722 | 215 | 2 | 4.3 | Trebouxia aggregata | 160068 | Plants | Plants | 193 | 1.07e-44 | NTclustered | gi|162134393|gb|EU124000.1| | 160068 | g33366 | i0 | 92.754 | 38.6790697674419 | 138 | 2 | 60 | 1 | 86 | 215 | 1175 | 1038 | Trebouxia aggregata strain SAG 219-1d hypothetical chloroplast RF20 (ycf20) gene, partial cds; and tRNA-Cys (trnC(gca)) gene, complete sequence; chloroplast | blastn | 8316 | 193 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 1860761 | 1860761 | PRJNA608660_P_NODE_45442_length_169_cov_1.733333_g45085_i0 | PRJNA608660 | 45442 | 169 | 1.733333 | 2.92933277 | Trebouxia aggregata | 160068 | Plants | Plants | 294 | 2.12e-75 | NTclustered | gi|162134227|gb|EU123945.1| | 160068 | g45085 | i0 | 99.383 | 32.2781065088757 | 162 | 1 | 96 | 0 | 1 | 162 | 4566 | 4727 | Trebouxia aggregata strain SAG 219-1d NADH dehydrogenase subunit 1 (nad1) and ATP synthase F1 subunit alpha (atp1) genes, complete cds; tRNA-Trp (trnW(cca)) and tRNA-Leu (trnL(uaa)) genes, complete sequence; and NADH dehydrogenase subunit 7 (nad7) and NADH dehydrogenase subunit 3 (nad3) genes, complete cds; mitochondrial | blastn | 5455 | 294 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 3135805 | 3135805 | PRJNA608660_P_NODE_983_length_1127_cov_34.223562_g231_i1 | PRJNA608660 | 983 | 1127 | 34.223562 | 385.69954374 | Trebouxia aggregata | 160068 | Plants | Plants | 1711 | 0 | NTclustered | gi|162134340|gb|EU123979.1| | 160068 | g231 | i1 | 95.113 | 77.2901508429459 | 1105 | 21 | 98 | 14 | 12 | 1116 | 2978 | 1907 | Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast | blastn | 87106 | 1711 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 4412102 | 4412102 | PRJNA608660_P_NODE_10804_length_454_cov_1.483951_g10458_i0 | PRJNA608660 | 10804 | 454 | 1.483951 | 6.73713754 | Trebouxia aggregata | 160068 | Plants | Plants | 348 | 5.010000000000001e-91 | NTclustered | gi|162134366|gb|EU123988.1| | 160068 | g10458 | i0 | 94.372 | 2.66299559471366 | 231 | 6 | 74 | 2 | 123 | 346 | 11309 | 11079 | Trebouxia aggregata strain SAG 219-1d subunit VIII of photosystem I (psaI) gene, complete cds; tRNA-Val (trnV(uac)), tRNA-Leu (trnL(caa)), and tRNA-Asp (trnD(guc)) genes, complete sequence; and CF1 epsilon subunit of ATP synthase (atpE) and CF1 beta subunit of ATP synthase (atpB) genes, complete cds; chloroplast | blastn | 1209 | 348 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 4412108 | 4412108 | PRJNA608660_P_NODE_11124_length_447_cov_1.560302_g10778_i0 | PRJNA608660 | 11124 | 447 | 1.560302 | 6.97454994 | Trebouxia sp. SL0000003 | 3350044 | Plants | Plants | 457 | 7.85e-124 | NTclustered | gi|2917929624|emb|OZ234912.1| | 3350044 | g10778 | i0 | 97.736 | 0.592841163310962 | 265 | 6 | 59 | 0 | 183 | 447 | 3229921 | 3229657 | Trebouxia sp. SL0000003 genome assembly, chromosome: 7 | blastn | 265 | 457 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. SL0000003 | |
| 8237656 | 8237656 | PRJNA608660_P_NODE_16147_length_361_cov_3.689103_g15793_i0 | PRJNA608660 | 16147 | 361 | 3.689103 | 13.31766183 | Prototheca wickerhamii | 3111 | Plants | Plants | 566 | 9.88e-157 | NTclustered | gi|478475922|gb|KC412221.1| | 3111 | g15793 | i0 | 95.265 | 74.617728531856 | 359 | 13 | 99 | 4 | 1 | 357 | 335 | 691 | Prototheca wickerhamii isolate FL11-0001 clone 5 28S ribosomal RNA gene, partial sequence | blastn | 26937 | 566 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Chlorellales | Chlorellaceae | Prototheca | Prototheca wickerhamii | |
| 8237910 | 8237910 | PRJNA608660_P_NODE_45967_length_168_cov_1.747899_g45610_i0 | PRJNA608660 | 45967 | 168 | 1.747899 | 2.93647032 | uncultured Trebouxiophyceae | 167235 | Plants | Plants | 254 | 3.6e-63 | NTclustered | gi|1735341972|gb|MN419172.1| | 167235 | g45610 | i0 | 95.57 | 1.88690476190476 | 158 | 7 | 94 | 0 | 1 | 158 | 373 | 530 | Uncultured Trebouxiophyceae clone EukCL3 large subunit ribosomal RNA gene, partial sequence | blastn | 317 | 254 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | uncultured Trebouxiophyceae | ||||
| 8799870 | 8799870 | PRJNA608660_P_NODE_7207_length_554_cov_13.702970_g6877_i0 | PRJNA608660 | 7207 | 554 | 13.70297 | 75.9144538 | Trebouxia | 13786 | Plants | Plants | 475 | 2.729999999999999e-129 | NTclustered | gi|162134340|gb|EU123979.1| | 160068 | g6877 | i0 | 98.162 | 117.003610108303 | 272 | 5 | 89 | 0 | 253 | 524 | 1200 | 1471 | Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast | blastn | 64820 | 475 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 9512963 | 9512963 | PRJNA608660_P_NODE_16948_length_351_cov_3.940397_g16594_i0 | PRJNA608660 | 16948 | 351 | 3.940397 | 13.83079347 | Trebouxia aggregata | 160068 | Plants | Plants | 512 | 1.27e-140 | NTclustered | gi|162134351|gb|EU123983.1| | 160068 | g16594 | i0 | 95.899 | 95.2706552706553 | 317 | 12 | 90 | 1 | 35 | 351 | 207 | 522 | Trebouxia aggregata strain SAG 219-1d D1 reaction center protein of photosystem II (psbA) and hypothetical protein (orf341) genes, complete cds; and tRNA-His (trnH(gug)) and tRNA-Gly (trnG(ucc)) genes, complete sequence; chloroplast | blastn | 33440 | 512 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 10789025 | 10789025 | PRJNA608660_P_NODE_40749_length_185_cov_2.382353_g40392_i0 | PRJNA608660 | 40749 | 185 | 2.382353 | 4.40735305 | Nannochloris normandinae | 926285 | Plants | Plants | 315 | 1.8199999999999998e-81 | NTclustered | gi|312205607|gb|HQ260626.1| | 926285 | g40392 | i0 | 97.297 | 110.52972972973 | 185 | 5 | 100 | 0 | 1 | 185 | 126 | 310 | Nannochloris normandinae strain SAG 9.82 D1 protein (psbA) gene, partial cds; chloroplast | blastn | 20448 | 315 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Chlorellales | Chlorellaceae | Nannochloris | Nannochloris normandinae | |
| 10789097 | 10789097 | PRJNA608660_P_NODE_50349_length_158_cov_3.339450_g49992_i0 | PRJNA608660 | 50349 | 158 | 3.33945 | 5.276331 | Trebouxia aggregata | 160068 | Plants | Plants | 276 | 7.120000000000001e-70 | NTclustered | gi|162134393|gb|EU124000.1| | 160068 | g49992 | i0 | 98.101 | 1 | 158 | 3 | 100 | 0 | 1 | 158 | 1044 | 887 | Trebouxia aggregata strain SAG 219-1d hypothetical chloroplast RF20 (ycf20) gene, partial cds; and tRNA-Cys (trnC(gca)) gene, complete sequence; chloroplast | blastn | 158 | 276 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 12063931 | 12063931 | PRJNA608660_P_NODE_15030_length_377_cov_2.832317_g14677_i0 | PRJNA608660 | 15030 | 377 | 2.832317 | 10.67783509 | Trebouxia aggregata | 160068 | Plants | Plants | 473 | 6.47e-129 | NTclustered | gi|162134245|gb|EU123948.1| | 160068 | g14677 | i0 | 95.89 | 40.3633952254642 | 292 | 12 | 77 | 0 | 7 | 298 | 15176 | 15467 | Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial | blastn | 15217 | 473 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 12064114 | 12064114 | PRJNA608660_P_NODE_35050_length_209_cov_1.300000_g34694_i0 | PRJNA608660 | 35050 | 209 | 1.3 | 2.717 | Corbierea radiosa | 51318 | Plants | Plants | 193 | 1.03e-44 | NTclustered | gi|2500263792|gb|MZ133461.1| | 51318 | g34694 | i0 | 84.536 | 94.5502392344498 | 194 | 30 | 93 | 0 | 7 | 200 | 385 | 192 | Corbierea radiosa PsbA (psbA) gene, partial cds; chloroplast | blastn | 19761 | 193 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Chlamydomonadales | Chlamydomonadaceae | Corbierea | Corbierea radiosa | |
| 12064290 | 12064290 | PRJNA608660_P_NODE_7930_length_529_cov_13.635417_g7595_i0 | PRJNA608660 | 7930 | 529 | 13.635417 | 72.13135593 | Prototheca wickerhamii | 3111 | Plants | Plants | 449 | 1.5799999999999998e-121 | NTclustered | gi|1334452589|gb|MG832952.1| | 3111 | g7595 | i0 | 97.015 | 58.8034026465028 | 268 | 7 | 51 | 1 | 254 | 521 | 1611 | 1877 | Prototheca wickerhamii isolate 73657-clone9 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence | blastn | 31107 | 449 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Chlorellales | Chlorellaceae | Prototheca | Prototheca wickerhamii | |
| 12064299 | 12064299 | PRJNA608660_P_NODE_8630_length_508_cov_3.671024_g8294_i0 | PRJNA608660 | 8630 | 508 | 3.671024 | 18.64880192 | Trebouxia aggregata | 160068 | Plants | Plants | 664 | 0 | NTclustered | gi|162134245|gb|EU123948.1| | 160068 | g8294 | i0 | 93.29 | 24.6358267716535 | 462 | 11 | 100 | 5 | 67 | 508 | 5209 | 5670 | Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial | blastn | 12515 | 664 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 12626019 | 12626019 | PRJNA608660_P_NODE_7590_length_541_cov_9.197154_g7258_i0 | PRJNA608660 | 7590 | 541 | 9.197154 | 49.75660314 | Trebouxia | 13786 | Plants | Plants | 555 | 3.319999999999999e-153 | NTclustered | gi|21631|emb|Z21553.1| | 13787 | g7258 | i0 | 94.693 | 82.0646950092421 | 358 | 18 | 81 | 1 | 174 | 531 | 1289 | 1645 | T.asymmetrica gene encoding 18S ribosomal RNA | blastn | 44397 | 555 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia asymmetrica | |
| 14613561 | 14613561 | PRJNA608660_P_NODE_20032_length_315_cov_2.774436_g19676_i0 | PRJNA608660 | 20032 | 315 | 2.774436 | 8.7394734 | Chloroidium ellipsoideum | 63676 | Plants | Plants | 518 | 2.42e-142 | NTclustered | gi|535783|dbj|D17810.1|CHLLSURRNA | 63676 | g19676 | i0 | 96.486 | 99.5206349206349 | 313 | 11 | 99 | 0 | 1 | 313 | 1930 | 2242 | Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron | blastn | 31349 | 518 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Watanabeales | Watanabeaceae | Chloroidium | Chloroidium ellipsoideum | |
| 14613854 | 14613854 | PRJNA608660_P_NODE_5652_length_615_cov_9.572438_g5345_i0 | PRJNA608660 | 5652 | 615 | 9.572438 | 58.8704937 | Trebouxia sp. A1-2 | 2608996 | Plants | Plants | 175 | 2.96e-49 | NR | KAA6425329.1 | 2608996 | g5345 | i0 | 93.3 | 1.30731707317073 | 89 | 6 | 43.4 | 0 | 600 | 334 | 310 | 398 | KAA6425329.1 MAG: adenosine kinase [Trebouxia sp. A1-2] | diamond | 804 | 175 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. A1-2 | |
| 15175227 | 15175227 | PRJNA608660_P_NODE_39272_length_191_cov_1.464789_g38915_i0 | PRJNA608660 | 39272 | 191 | 1.464789 | 2.79774699 | Trebouxia | 13786 | Plants | Plants | 243 | 9.08e-60 | NTclustered | gi|255653894|gb|FJ804760.1| | 53268 | g38915 | i0 | 99.254 | 9.07853403141361 | 134 | 1 | 93 | 0 | 45 | 178 | 3628 | 3761 | Trebouxia arboricola strain SAG 219-1A large subunit ribosomal RNA gene, partial sequence; and hypothetical protein genes, complete cds; chloroplast | blastn | 1734 | 243 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia arboricola | |
| 15887673 | 15887673 | PRJNA608660_P_NODE_38773_length_193_cov_1.291667_g38417_i0 | PRJNA608660 | 38773 | 193 | 1.291667 | 2.49291731 | Volvox carteri | 3067 | Plants | Plants | 213 | 7.21e-51 | NTclustered | gi|302847322|ref|XM_002955150.1| | 3068 | g38417 | i0 | 92.053 | 72.2538860103627 | 151 | 12 | 78 | 0 | 1 | 151 | 443 | 293 | Volvox carteri f. nagariensis polyubiquitin (ubqB), mRNA | blastn | 13945 | 213 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Chlamydomonadales | Volvocaceae | Volvox | Volvox carteri | |
| 15887804 | 15887804 | PRJNA608660_P_NODE_813_length_1190_cov_6.018405_g692_i0 | PRJNA608660 | 813 | 1190 | 6.018405 | 71.6190195 | Trebouxia aggregata | 160068 | Plants | Plants | 1208 | 0 | NTclustered | gi|162134316|gb|EU123974.1| | 160068 | g692 | i0 | 97.592 | 94.6647058823529 | 706 | 16 | 100 | 1 | 1 | 705 | 1318 | 613 | Trebouxia aggregata strain SAG 219-1d D2 reaction center protein of photosystem II (psbD), CP43 chlorophyll apoprotein of photosystem II (psbC), apocytochrome b6 of cytochrome b6/f complex (petB), and subunit IV of cytochrome b6/f complex (petD) genes, complete cds; chloroplast | blastn | 112651 | 1208 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 16449631 | 16449631 | PRJNA608660_P_NODE_32473_length_221_cov_4.563953_g32117_i0 | PRJNA608660 | 32473 | 221 | 4.563953 | 10.08633613 | Trebouxia | 13786 | Plants | Plants | 409 | 1.0100000000000001e-109 | NTclustered | gi|2154806798|gb|OL614541.1| | 53267 | g32117 | i0 | 100 | 100 | 221 | 0 | 100 | 0 | 1 | 221 | 268 | 48 | Trebouxia jamesii clone NJ2018044 small subunit ribosomal RNA gene, partial sequence | blastn | 22100 | 409 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia jamesii | |
| 16449682 | 16449682 | PRJNA608660_P_NODE_48473_length_164_cov_1.034783_g48116_i0 | PRJNA608660 | 48473 | 164 | 1.034783 | 1.69704412 | root | 1 | Root_unresolved | Root_unresolved | 303 | 3.42e-78 | NTclustered | gi|1992615818|gb|MW648643.1| | 37433 | g48116 | i0 | 100 | 99.6036585365854 | 164 | 0 | 100 | 0 | 1 | 164 | 27 | 190 | Stichococcus bacillaris strain TCC145-1-sq1 large subunit ribosomal RNA gene, partial sequence; chloroplast | blastn | 16335 | 303 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Prasiolales | Stichococcaceae | Stichococcus | Stichococcus bacillaris | |
| 18436619 | 18436619 | PRJNA608660_P_NODE_18875_length_328_cov_2.777778_g18519_i0 | PRJNA608660 | 18875 | 328 | 2.777778 | 9.11111184 | Trebouxia aggregata | 160068 | Plants | Plants | 584 | 2.459999999999999e-162 | NTclustered | gi|162134245|gb|EU123948.1| | 160068 | g18519 | i0 | 98.78 | 33.5579268292683 | 328 | 4 | 100 | 0 | 1 | 328 | 6930 | 6603 | Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial | blastn | 11007 | 584 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 19711200 | 19711200 | PRJNA608660_P_NODE_22776_length_288_cov_5.891213_g22420_i0 | PRJNA608660 | 22776 | 288 | 5.891213 | 16.96669344 | Trebouxia lynnae | 1825957 | Plants | Plants | 497 | 2.85e-136 | NTclustered | gi|1016111943|gb|KU716051.1| | 1825957 | g22420 | i0 | 98.239 | 17.90625 | 284 | 5 | 99 | 0 | 5 | 288 | 6943 | 6660 | Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence | blastn | 5157 | 497 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia lynnae | |
| 19711398 | 19711398 | PRJNA608660_P_NODE_4616_length_671_cov_2.699357_g4325_i0 | PRJNA608660 | 4616 | 671 | 2.699357 | 18.11268547 | Trebouxia sp. SL0000003 | 3350044 | Plants | Plants | 302 | 6.010000000000001e-77 | NTclustered | gi|2917929626|emb|OZ234914.1| | 3350044 | g4325 | i0 | 93.97 | 0.445603576751118 | 199 | 12 | 44 | 0 | 110 | 308 | 1164810 | 1164612 | Trebouxia sp. SL0000003 genome assembly, chromosome: 9 | blastn | 299 | 302 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. SL0000003 | |
| 22824243 | 22824243 | PRJNA608660_P_NODE_24238_length_275_cov_19.261062_g23882_i0 | PRJNA608660 | 24238 | 275 | 19.261062 | 52.9679205 | Viridiplantae | 33090 | Plants | Plants | 394 | 3.65e-105 | NTclustered | gi|725651062|ref|NC_025538.1| | 160069 | g23882 | i0 | 94.862 | 158.927272727273 | 253 | 12 | 95 | 1 | 23 | 275 | 99822 | 99571 | Gloeotilopsis sterilis culture-collection UTEX:1704 chloroplast, complete genome | blastn | 43705 | 396 | 0.994949494949495 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Ulvophyceae | Ulotrichales | Ulotrichaceae | Gloeotilopsis | Gloeotilopsis sterilis | |
| 22824255 | 22824255 | PRJNA608660_P_NODE_26818_length_255_cov_12.271845_g26462_i0 | PRJNA608660 | 26818 | 255 | 12.271845 | 31.29320475 | Trebouxia | 13786 | Plants | Plants | 285 | 2.1e-72 | NTclustered | gi|1996832302|gb|MW695159.1| | 13787 | g26462 | i0 | 100 | 95.7647058823529 | 154 | 0 | 91 | 0 | 12 | 165 | 424 | 271 | Trebouxia asymmetrica voucher SRB-11 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence | blastn | 24420 | 285 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia asymmetrica | |
| 24810789 | 24810789 | PRJNA608660_P_NODE_1080_length_1100_cov_35.137964_g231_i2 | PRJNA608660 | 1080 | 1100 | 35.137964 | 386.517604 | Trebouxia aggregata | 160068 | Plants | Plants | 1892 | 0 | NTclustered | gi|162134340|gb|EU123979.1| | 160068 | g231 | i2 | 98.423 | 88.4663636363636 | 1078 | 11 | 98 | 1 | 12 | 1089 | 1907 | 2978 | Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast | blastn | 97313 | 1892 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 24811080 | 24811080 | PRJNA608660_P_NODE_38280_length_195_cov_1.068493_g37924_i0 | PRJNA608660 | 38280 | 195 | 1.068493 | 2.08356135 | Trebouxia | 13786 | Plants | Plants | 134 | 1.32e-36 | NR | KAL3145898.1 | 3373144 | g37924 | i0 | 98.4 | 1.96923076923077 | 64 | 1 | 98.5 | 0 | 2 | 193 | 222 | 285 | KAL3145898.1 Chlorophyll a-b binding protein 6, chloroplastic [Trebouxia sp. C0009 RCD-2024] | diamond | 384 | 134 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0009 RCD-2024 | |
| 24811197 | 24811197 | PRJNA608660_P_NODE_6440_length_583_cov_2.647940_g6119_i0 | PRJNA608660 | 6440 | 583 | 2.64794 | 15.4374902 | Trebouxia aggregata | 160068 | Plants | Plants | 918 | 0 | NTclustered | gi|162134245|gb|EU123948.1| | 160068 | g6119 | i0 | 96.763 | 68.5128644939966 | 556 | 9 | 94 | 2 | 37 | 583 | 12908 | 13463 | Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial | blastn | 39943 | 918 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia aggregata | |
| 27238104 | 27238104 | PRJNA608660_P_NODE_46963_length_167_cov_0.881356_g46606_i0 | PRJNA608660 | 46963 | 167 | 0.881356 | 1.47186452 | Trebouxia sp. C | 2796353 | Plants | Plants | 89.4 | 5.04e-19 | NR | KAL3133156.1 | 3373144 | g46606 | i0 | 90.4 | 0.934131736526946 | 52 | 4 | 93.4 | 1 | 167 | 12 | 754 | 804 | KAL3133156.1 hypothetical protein ABBQ38_007050 [Trebouxia sp. C0009 RCD-2024] | diamond | 156 | 89.4 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0009 RCD-2024 | |
| 27396359 | 27396359 | PRJNA608660_P_NODE_35263_length_208_cov_1.308176_g34907_i0 | PRJNA608660 | 35263 | 208 | 1.308176 | 2.72100608 | Trebouxia sp. C | 2796353 | Plants | Plants | 57.8 | 6.23e-8 | NR | KAL3147343.1 | 3373145 | g34907 | i0 | 76.3 | 0.548076923076923 | 38 | 9 | 54.8 | 0 | 120 | 7 | 1 | 38 | KAL3147343.1 hypothetical protein ABBQ32_002826 [Trebouxia sp. C0010 RCD-2024] | diamond | 114 | 57.8 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0010 RCD-2024 | |
| 27427979 | 27427979 | PRJNA608660_P_NODE_24803_length_271_cov_1.608108_g24447_i0 | PRJNA608660 | 24803 | 271 | 1.608108 | 4.35797268 | Trebouxia sp. C | 2796353 | Plants | Plants | 70.5 | 9.18e-12 | NR | KAL0047354.1 | 2905655 | g24447 | i0 | 78.6 | 0.929889298892989 | 42 | 9 | 46.5 | 0 | 126 | 1 | 1 | 42 | KAL0047354.1 hypothetical protein WJX82_001254 [Trebouxia sp. C0006] | diamond | 252 | 70.5 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0006 | |
| 28059162 | 28059162 | PRJNA608660_P_NODE_8605_length_509_cov_2.826087_g8270_i0 | PRJNA608660 | 8605 | 509 | 2.826087 | 14.38478283 | Trebouxia sp. C | 2796353 | Plants | Plants | 133 | 5.38e-37 | NR | KAL3152567.1 | 3373145 | g8270 | i0 | 91.8 | 0.430255402750491 | 73 | 6 | 43 | 0 | 400 | 182 | 25 | 97 | KAL3152567.1 hypothetical protein ABBQ32_001592 [Trebouxia sp. C0010 RCD-2024] | diamond | 219 | 133 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0010 RCD-2024 | |
| 29038291 | 29038291 | PRJNA608660_P_NODE_21008_length_305_cov_2.339844_g20652_i0 | PRJNA608660 | 21008 | 305 | 2.339844 | 7.1365242 | Trebouxia sp. C | 2796353 | Plants | Plants | 184 | 1.67e-51 | NR | KAL3158463.1 | 3373144 | g20652 | i0 | 90 | 1.9672131147541 | 100 | 10 | 98.4 | 0 | 302 | 3 | 2514 | 2613 | KAL3158463.1 hypothetical protein ABBQ38_010696 [Trebouxia sp. C0009 RCD-2024] | diamond | 600 | 184 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0009 RCD-2024 | |
| 29543109 | 29543109 | PRJNA608660_P_NODE_32070_length_224_cov_1.080000_g31714_i0 | PRJNA608660 | 32070 | 224 | 1.08 | 2.4192 | Chlamydomonas sp. ICE-L | 309537 | Plants | Plants | 40.8 | 0.0165 | NR | ABD64591.1 | 309537 | g31714 | i0 | 89.5 | 1.75446428571429 | 19 | 2 | 25.4 | 0 | 167 | 223 | 25 | 43 | ABD64591.1 ribosomal protein S29 subunit [Chlamydomonas sp. ICE-L] | diamond | 393 | 40.8 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Chlorophyceae | Chlamydomonadales | Chlamydomonadaceae | Chlamydomonas | Chlamydomonas sp. ICE-L | |
| 30648582 | 30648582 | PRJNA608660_P_NODE_5393_length_628_cov_9.120898_g5090_i0 | PRJNA608660 | 5393 | 628 | 9.120898 | 57.27923944 | Trebouxia sp. C | 2796353 | Plants | Plants | 104 | 2.45e-23 | NR | KAL3152533.1 | 3373145 | g5090 | i0 | 77.6 | 0.320063694267516 | 67 | 15 | 32 | 0 | 599 | 399 | 190 | 256 | KAL3152533.1 hypothetical protein ABBQ32_001562 [Trebouxia sp. C0010 RCD-2024] | diamond | 201 | 104 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0010 RCD-2024 | |
| 32514893 | 32514893 | PRJNA608660_P_NODE_22939_length_287_cov_2.000000_g22583_i0 | PRJNA608660 | 22939 | 287 | 2 | 5.74 | Trebouxia sp. C | 2796353 | Plants | Plants | 125 | 1.28e-32 | NR | KAL3146532.1 | 3373145 | g22583 | i0 | 70.7 | 0.961672473867596 | 92 | 22 | 96.2 | 1 | 7 | 282 | 89 | 175 | KAL3146532.1 hypothetical protein ABBQ32_000777 [Trebouxia sp. C0010 RCD-2024] | diamond | 276 | 125 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0010 RCD-2024 | |
| 32514895 | 32514895 | PRJNA608660_P_NODE_4739_length_663_cov_11.892508_g4447_i0 | PRJNA608660 | 4739 | 663 | 11.892508 | 78.84732804 | Trebouxia sp. C | 2796353 | Plants | Plants | 113 | 5.08e-25 | NR | KAL3137028.1 | 3373145 | g4447 | i0 | 88.5 | 0.276018099547511 | 61 | 7 | 27.6 | 0 | 195 | 377 | 458 | 518 | KAL3137028.1 hypothetical protein ABBQ32_006616 [Trebouxia sp. C0010 RCD-2024] | diamond | 183 | 113 | 1 | Eukaryota | core chlorophytes | Viridiplantae | Chlorophyta | Trebouxiophyceae | Trebouxiales | Trebouxiaceae | Trebouxia | Trebouxia sp. C0010 RCD-2024 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;