RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA608660", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA608660 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31028147 31028147 PRJNA608660_P_NODE_13055_length_409_cov_2.427778_g12706_i0 PRJNA608660 13055 409 2.427778 9.92961202 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 48.9 0.00154   NR OQR85564.1 1202772 g12706 i0 34.4 0.469437652811736 64 41 46.9 1 351 160 374 436 OQR85564.1 transmembrane protein [Achlya hypogyna] diamond 192 48.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
32842724 32842724 PRJNA608660_P_NODE_700_length_1243_cov_13.223618_g589_i0 PRJNA608660 700 1243 13.223618 164.36957174 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 137 3.6199999999999997e-34   NR XP_067750673.1 164328 g589 i0 37.9 1.88736926790024 195 118 47.1 2 562 1146 1 192 XP_067750673.1 Vesicle-associated membrane protein 7B [Phytophthora ramorum] diamond 2346 138 0.992753623188406 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;