RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA608660", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA608660 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20986965 20986965 PRJNA608660_P_NODE_23477_length_282_cov_2.197425_g23121_i0 PRJNA608660 23477 282 2.197425 6.1967385 Hantzschia amphioxys 186034 SAR_Eukaryotes SAR_Eukaryotes 429 1.03e-115   NTclustered gi|725539095|gb|KM407568.1| 186034 g23121 i0 97.976 93.2198581560284 247 5 88 0 36 282 1 247 Hantzschia amphioxys isolate Ant025-E04 28S ribosomal RNA gene, partial sequence blastn 26288 429 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Hantzschia Hantzschia amphioxys
23537241 23537241 PRJNA608660_P_NODE_38119_length_195_cov_2.547945_g37763_i0 PRJNA608660 38119 195 2.547945 4.96849275 Odontella sp. (in: diatoms) 40357 SAR_Eukaryotes SAR_Eukaryotes 183 5.729999999999998e-42   NTclustered gi|1377545700|gb|MG835798.1| 40357 g37763 i0 88.667 0.769230769230769 150 17 77 0 1 150 626 775 Odontella sp. (in: Bacillariophyta) isolate SKLMP_B005 28S ribosomal RNA gene, partial sequence blastn 150 183 1 Eukaryota Sar   Bacillariophyta Mediophyceae Eupodiscales Odontellaceae Odontella Odontella sp. (in: diatoms)
24811014 24811014 PRJNA608660_P_NODE_30820_length_231_cov_0.950549_g30464_i0 PRJNA608660 30820 231 0.950549 2.19576819 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 248 2.45e-61   NTclustered gi|146762526|gb|EF553458.1| 2850 g30464 i0 91.713 76.3766233766234 181 12 78 3 15 194 4280 4102 Phaeodactylum tricornutum strain CCAP 1055/1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17643 248 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
28501365 28501365 PRJNA608660_P_NODE_49327_length_163_cov_0.912281_g48970_i0 PRJNA608660 49327 163 0.912281 1.48701803 Fistulifera solaris 1519565 SAR_Eukaryotes SAR_Eukaryotes 48.1 1.59e-4   NR GAX27481.1 1519565 g48970 i0 55.3 1.39877300613497 38 17 69.9 0 126 13 95 132 GAX27481.1 hypothetical protein FisN_23Hu053 [Fistulifera solaris] diamond 228 48.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;