RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA608660", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA608660 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8237809 8237809 PRJNA608660_P_NODE_33407_length_216_cov_10.706587_g33051_i0 PRJNA608660 33407 216 10.706587 23.12622792 Cladochytriales sp. 2011712 Fungi Fungi 165 2.35e-36   NTclustered gi|2468791027|gb|OQ702924.1| 2011712 g33051 i0 82.323 70.0787037037037 198 28 91 6 8 203 4182 4374 Cladochytriales sp. isolate PSC252 internal transcribed spacer region, partial sequence blastn 15137 165 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales     Cladochytriales sp.
20273425 20273425 PRJNA608660_P_NODE_4076_length_703_cov_6.460245_g3805_i0 PRJNA608660 4076 703 6.460245 45.41552235 Fungi 4751 Fungi Fungi 235 6.5e-57   NTclustered gi|311235629|ref|NG_027646.1| 82268 g3805 i0 80.906 56.7169274537696 309 49 80 9 329 633 1523 1825 Hyaloraphidium curvatum SAG 235-1 28S rRNA gene, partial sequence; from reference material blastn 39872 235 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
31407452 31407452 PRJNA608660_P_NODE_24696_length_272_cov_1.399103_g24340_i0 PRJNA608660 24696 272 1.399103 3.80556016 Hyaloraphidium curvatum 82268 Fungi Fungi 126 2.09e-33   NR KAI9010688.1 82268 g24340 i0 73.3 0.827205882352941 75 20 82.7 0 47 271 64 138 KAI9010688.1 putative ribosome biogenesis protein C16orf42 [Hyaloraphidium curvatum] diamond 225 126 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;