RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA608660" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA608660 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1147041 1147041 PRJNA608660_P_NODE_45841_length_168_cov_3.453782_g45484_i0 PRJNA608660 45841 168 3.453782 5.80235376 Kinetoplastea 5653 Euglenozoa other_Eukaryota 287 3.55e-73   NTclustered gi|59891965|gb|AY753625.1| 313291 g45484 i0 100 67.6547619047619 155 0 92 0 1 155 754 908 Bodonidae sp. Pan2 18S ribosomal RNA gene, partial sequence blastn 11366 287 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae   Bodonidae sp. Pan2
13338922 13338922 PRJNA608660_P_NODE_42391_length_179_cov_2.169231_g42034_i0 PRJNA608660 42391 179 2.169231 3.88292349 Petalomonas acorensis 2529306 Euglenozoa other_Eukaryota 196 6.62e-46   NTclustered gi|1580982997|gb|MK564754.1| 2529306 g42034 i0 88.82 69.2234636871508 161 16 89 2 13 172 320 479 Petalomonas acorensis strain HFCC220 small subunit ribosomal RNA gene, partial sequence blastn 12391 196 1 Eukaryota Discoba   Euglenozoa Euglenida Petalomonadida Scytomonadidae Petalomonas Petalomonas acorensis
18998354 18998354 PRJNA608660_P_NODE_31115_length_229_cov_1.644444_g30759_i0 PRJNA608660 31115 229 1.644444 3.76577676 Entosiphon 101492 Euglenozoa other_Eukaryota 126 1.19e-24   NTclustered gi|37542663|gb|AY061999.1| 101493 g30759 i0 96.104 3.21397379912664 77 3 34 0 140 216 1712 1636 Entosiphon sulcatum small subunit ribosomal RNA gene, partial sequence blastn 736 126 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
23537222 23537222 PRJNA608660_P_NODE_36179_length_204_cov_1.006452_g35823_i0 PRJNA608660 36179 204 1.006452 2.05316208 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 97.1 8.11e-16   NTclustered gi|2031938879|emb|OD957452.1| 5763 g35823 i0 100 14.2696078431373 52 0 25 0 1 52 603 552 Naegleria fowleri Karachi_NF001 strain blastn 2911 97.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
28374925 28374925 PRJNA608660_P_NODE_44806_length_171_cov_1.704918_g44449_i0 PRJNA608660 44806 171 1.704918 2.91540978 Trypanosoma rangeli SC58 429131 Euglenozoa other_Eukaryota 41.2 0.04   NR ESL05026.1 429131 g44449 i0 63 0.473684210526316 27 10 47.4 0 94 14 43 69 ESL05026.1 hypothetical protein TRSC58_07379 [Trypanosoma rangeli SC58] diamond 81 41.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
30978079 30978079 PRJNA608660_P_NODE_48274_length_164_cov_2.191304_g47917_i0 PRJNA608660 48274 164 2.191304 3.59373856 Trypanosoma 5690 Euglenozoa other_Eukaryota 46.2 6.32e-4   NR PWV10859.1 5693 g47917 i0 87 0.841463414634146 23 3 42.1 0 55 123 171 193 PWV10859.1 hypothetical protein C3747_64g2 [Trypanosoma cruzi] diamond 138 46.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;