RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA608660", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA608660 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13338853 13338853 PRJNA608660_P_NODE_34611_length_211_cov_1.395062_g34255_i0 PRJNA608660 34611 211 1.395062 2.94358082 Paravannella minima 1443144 Discosea other_Eukaryota 372 1.25e-98   NTclustered gi|571331048|gb|KF895375.1| 1443144 g34255 i0 99.038 93.2890995260664 208 1 99 1 4 211 443 237 Paravannella minima strain CCAP 1533/1 18S ribosomal RNA gene, partial sequence blastn 19684 372 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
13338895 13338895 PRJNA608660_P_NODE_39271_length_191_cov_1.464789_g38914_i0 PRJNA608660 39271 191 1.464789 2.79774699 Vannella septentrionalis 197531 Discosea other_Eukaryota 265 1.94e-66   NTclustered gi|300078499|gb|GU001161.1| 197531 g38914 i0 91.71 58.0837696335079 193 12 100 4 1 191 2579 2769 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11094 265 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14613650 14613650 PRJNA608660_P_NODE_29232_length_240_cov_2.031414_g28876_i0 PRJNA608660 29232 240 2.031414 4.8753936 Paravannella minima 1443144 Discosea other_Eukaryota 436 5.1000000000000005e-118   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g28876 i0 100 5.45416666666667 236 0 98 0 5 240 14533 14768 Paravannella minima mitochondrion, complete genome blastn 1309 436 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
22261802 22261802 PRJNA608660_P_NODE_30558_length_232_cov_2.469945_g30202_i0 PRJNA608660 30558 232 2.469945 5.7302724 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 344 3.06e-90   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g30202 i0 94.667 15.5086206896552 225 7 95 3 12 232 1745 1522 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 3598 344 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
23536992 23536992 PRJNA608660_P_NODE_12499_length_419_cov_12.778378_g12152_i0 PRJNA608660 12499 419 12.778378 53.54140382 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 743 0   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g12152 i0 99.27 53.9665871121718 411 3 98 0 2 412 28 438 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 22612 743 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
24811091 24811091 PRJNA608660_P_NODE_39820_length_189_cov_1.457143_g39463_i0 PRJNA608660 39820 189 1.457143 2.75400027 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 185 1.5299999999999998e-42   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g39463 i0 88.75 0.846560846560847 160 6 84 7 12 169 840 691 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 160 185 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;