RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA606583", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA606583 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2421855 2421855 PRJNA606583_P_NODE_4322_length_639_cov_2.440199_g3953_i0 PRJNA606583 4322 639 2.440199 15.59287161 Thermoproteati 1783275 Archaea Archaea 957 0   NTclustered gi|22797874|emb|AJ496176.1| 29281 g3953 i0 94.286 39.9859154929577 630 29 98 5 12 638 6179 6804 Uncultured crenarchaeote 34 kb genomic fragment blastn 25551 957 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
12625631 12625631 PRJNA606583_P_NODE_5970_length_555_cov_3.428571_g5566_i0 PRJNA606583 5970 555 3.428571 19.02856905 Thermoproteati 1783275 Archaea Archaea 959 0   NTclustered gi|220683870|gb|FJ468481.1| 29281 g5566 i0 98.179 102.495495495495 549 10 99 0 7 555 1435 887 Uncultured crenarchaeote clone M72 16S ribosomal RNA gene, partial sequence blastn 56885 959 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;