RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA606583", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA606583 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5687218 5687218 PRJNA606583_P_NODE_17825_length_291_cov_2.031496_g17396_i0 PRJNA606583 17825 291 2.031496 5.91165336 Acidobacteriota bacterium 1978231 Bacteria Bacteria 350 8.54e-92   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g17396 i0 88.581 193.371134020619 289 32 99 1 4 291 3298466 3298178 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 56271 350 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
10787809 10787809 PRJNA606583_P_NODE_19489_length_273_cov_1.283898_g19060_i0 PRJNA606583 19489 273 1.283898 3.50504154 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 449 7.61e-122   NTclustered gi|31789464|gb|AY281356.1| 171953 g19060 i0 96.337 98.2380952380952 273 10 100 0 1 273 9834 10106 Uncultured Acidobacteria bacterium clone 41b15 genomic sequence blastn 26819 449 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
15174779 15174779 PRJNA606583_P_NODE_37252_length_165_cov_0.914062_g36823_i0 PRJNA606583 37252 165 0.914062 1.5082023 Geothrix 44675 Bacteria Bacteria 289 9.66e-74   NTclustered gi|84452196|emb|AM180894.1| 44676 g36823 i0 98.182 35.0424242424242 165 3 100 0 1 165 1259 1423 Geothrix fermentans partial 23S rRNA gene, strain DSM 14018 blastn 5782 289 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix fermentans
28785234 28785234 PRJNA606583_P_NODE_42307_length_151_cov_2.263158_g41878_i0 PRJNA606583 42307 151 2.263158 3.41736858 Silvibacterium dinghuense 1560006 Bacteria Bacteria 41.6 0.0279   NR WP_129209428.1 1560006 g41878 i0 48.8 1.60927152317881 43 19 79.5 1 7 126 228 270 WP_129209428.1 glycoside hydrolase family 3 C-terminal domain-containing protein [Silvibacterium dinghuense] diamond 243 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Silvibacterium Silvibacterium dinghuense
30048320 30048320 PRJNA606583_P_NODE_27031_length_210_cov_2.156069_g26602_i0 PRJNA606583 27031 210 2.156069 4.5277449 Terracidiphilus sp. 1964191 Bacteria Bacteria 43.5 0.012   NR HEX7729701.1 1964191 g26602 i0 41.7 0.685714285714286 48 28 68.6 0 6 149 213 260 HEX7729701.1 hypothetical protein [Terracidiphilus sp.] diamond 144 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
30743596 30743596 PRJNA606583_P_NODE_15394_length_323_cov_1.269231_g14965_i0 PRJNA606583 15394 323 1.269231 4.09961613 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 42 0.0249   NR HXA52628.1 3069120 g14965 i0 51.5 0.306501547987616 33 16 30.7 0 303 205 24 56 HXA52628.1 hypothetical protein [Candidatus Acidiferrum sp.] diamond 99 42 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;