RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA606583", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA606583 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28974965 28974965 PRJNA606583_P_NODE_15548_length_320_cov_4.978799_g15119_i0 PRJNA606583 15548 320 4.978799 15.9321568 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 45.8 0.00721   NR MDD6181524.1 2049043 g15119 i0 38.5 0.975 104 54 90.9 4 24 314 64 164 MDD6181524.1 carbon starvation CstA family protein [Desulfovibrionaceae bacterium] diamond 312 45.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
30333323 30333323 PRJNA606583_P_NODE_31212_length_188_cov_1.291391_g30783_i0 PRJNA606583 31212 188 1.291391 2.42781508 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 95.5 3.2500000000000003e-21   NR MCP3872942.1 2049433 g30783 i0 77.4 0.98936170212766 62 14 98.9 0 188 3 161 222 MCP3872942.1 IS110 family transposase [Desulfobacteraceae bacterium] diamond 186 95.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;