RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA606583", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA606583 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9511927 9511927 PRJNA606583_P_NODE_12248_length_376_cov_1.595870_g11821_i0 PRJNA606583 12248 376 1.59587 6.0004712 Labilithrix luteola 1391654 Bacteria Bacteria 534 2.92e-147   NTclustered gi|913610804|gb|CP012333.1| 1391654 g11821 i0 92.287 133.449468085106 376 29 100 0 1 376 3942689 3942314 Labilithrix luteola strain DSM 27648, complete genome blastn 50177 534 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
16449227 16449227 PRJNA606583_P_NODE_39393_length_158_cov_3.330579_g38964_i0 PRJNA606583 39393 158 3.330579 5.26231482 Pendulispora 3375062 Bacteria Bacteria 189 9.54e-44   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g38964 i0 88.535 57.3354430379747 157 16 99 2 1 156 3589320 3589475 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 9059 189 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;