RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA606583" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Sar · 11 ✖

bioproject 1

  • PRJNA606583 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
583452 583452 PRJNA606583_P_NODE_15821_length_316_cov_9.082437_g15392_i0 PRJNA606583 15821 316 9.082437 28.70050092 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 516 8.73e-142   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g15392 i0 96.19 38.7974683544304 315 12 99 0 1 315 324 10 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 12260 516 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
583563 583563 PRJNA606583_P_NODE_35101_length_172_cov_1.155556_g34672_i0 PRJNA606583 35101 172 1.155556 1.98755632 Poteriospumella lacustris 1117027 SAR_Eukaryotes SAR_Eukaryotes 265 1.7e-66   NTclustered gi|1922073065|gb|MN935478.1| 1117027 g34672 i0 99.315 86.5813953488372 146 1 85 0 1 146 47996 48141 Poteriospumella lacustris strain Yongseonkyo072317C3 leucoplast blastn 14892 265 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
2421716 2421716 PRJNA606583_P_NODE_33542_length_177_cov_3.342857_g33113_i0 PRJNA606583 33542 177 3.342857 5.91685689 Poteriospumella 1117026 SAR_Eukaryotes SAR_Eukaryotes 327 2.2199999999999996e-85   NTclustered gi|685431582|gb|KF697341.1| 1117027 g33113 i0 100 77.316384180791 177 0 100 0 1 177 45 221 Poteriospumella lacustris strain JBC07 28S ribosomal RNA gene, partial sequence blastn 13685 327 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
9511958 9511958 PRJNA606583_P_NODE_20568_length_261_cov_6.312500_g20139_i0 PRJNA606583 20568 261 6.3125 16.475625 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 427 3.38e-115   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g20139 i0 96.169 15.2030651340996 261 10 100 0 1 261 391 651 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 3968 427 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
11349947 11349947 PRJNA606583_P_NODE_36729_length_166_cov_2.116279_g36300_i0 PRJNA606583 36729 166 2.116279 3.51302314 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 307 2.69e-79   NTclustered gi|2065561668|gb|MZ540265.1| 44029 g36300 i0 100 86.1084337349398 166 0 100 0 1 166 755 590 Paramecium jenningsi isolate UR02 small subunit ribosomal RNA gene, partial sequence blastn 14294 307 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium jenningsi
15886525 15886525 PRJNA606583_P_NODE_28813_length_200_cov_1.171779_g28384_i0 PRJNA606583 28813 200 1.171779 2.343558 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 283 5.659999999999999e-72   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g28384 i0 93.651 2.84 189 12 95 0 12 200 1958 2146 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 568 283 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
18997600 18997600 PRJNA606583_P_NODE_15075_length_327_cov_3.175862_g14646_i0 PRJNA606583 15075 327 3.175862 10.38506874 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 560 4.13e-155   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g14646 i0 97.554 12.9938837920489 327 8 100 0 1 327 1512 1838 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 4249 560 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
19710094 19710094 PRJNA606583_P_NODE_16056_length_313_cov_2.826087_g15627_i0 PRJNA606583 16056 313 2.826087 8.84565231 Poteriospumella lacustris 1117027 SAR_Eukaryotes SAR_Eukaryotes 568 2.3499999999999998e-157   NTclustered gi|2295553597|gb|OP378946.1| 1117027 g15627 i0 99.361 93.4472843450479 313 2 100 0 1 313 1679 1367 Poteriospumella lacustris isolate 1532 large subunit ribosomal RNA gene, partial sequence blastn 29249 568 1 Eukaryota Sar     Chrysophyceae Chromulinales Dinobryaceae Poteriospumella Poteriospumella lacustris
19710216 19710216 PRJNA606583_P_NODE_37676_length_163_cov_1.841270_g37247_i0 PRJNA606583 37676 163 1.84127 3.0012701 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 78.7 2.24e-10   NTclustered gi|288272|emb|X58846.1| 5911 g37247 i0 91.228 103.147239263804 57 5 35 0 107 163 67 11 T.thermophila U2.2 snRNA blastn 16813 78.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
20272914 20272914 PRJNA606583_P_NODE_31896_length_185_cov_1.310811_g31467_i0 PRJNA606583 31896 185 1.310811 2.42500035 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 326 8.430000000000001e-85   NTclustered gi|2065561668|gb|MZ540265.1| 44029 g31467 i0 98.387 100.502702702703 186 2 100 1 1 185 315 130 Paramecium jenningsi isolate UR02 small subunit ribosomal RNA gene, partial sequence blastn 18593 326 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium jenningsi
22823445 22823445 PRJNA606583_P_NODE_13178_length_358_cov_6.744548_g12750_i0 PRJNA606583 13178 358 6.744548 24.14548184 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 230 1.4599999999999995e-55   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g12750 i0 97.059 1.13966480446927 136 4 38 0 1 136 2947 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 408 230 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;