RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA606583" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA606583 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3134408 3134408 PRJNA606583_P_NODE_27543_length_207_cov_1.564706_g27114_i0 PRJNA606583 27543 207 1.564706 3.23894142 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 289 1.27e-73   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g27114 i0 91.905 184.429951690821 210 11 99 6 2 207 7051250 7051043 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 38177 289 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
8799499 8799499 PRJNA606583_P_NODE_6707_length_525_cov_2.295082_g6293_i0 PRJNA606583 6707 525 2.295082 12.0491805 Singulisphaera 466152 Bacteria Bacteria 699 0   NTclustered gi|485099129|ref|NR_102524.1| 466153 g6293 i0 90.926 183.857142857143 529 34 100 12 1 525 757 1275 Singulisphaera acidiphila strain MOB10 23S ribosomal RNA gene, complete sequence blastn 96525 699 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera acidiphila
15886474 15886474 PRJNA606583_P_NODE_16893_length_302_cov_2.679245_g16464_i0 PRJNA606583 16893 302 2.679245 8.0913199 Isosphaeraceae bacterium EP7 3139350 Bacteria Bacteria 388 1.89e-103   NTclustered gi|2719878338|gb|CP151667.1| 3139350 g16464 i0 89.836 49.6092715231788 305 27 100 4 1 302 1599365 1599668 Isosphaeraceae bacterium EP7 chromosome, complete genome blastn 14982 388 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium EP7
18435611 18435611 PRJNA606583_P_NODE_15275_length_324_cov_3.010453_g14846_i0 PRJNA606583 15275 324 3.010453 9.75386772 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 399 9.429999999999998e-107   NTclustered gi|2874254106|emb|OY970189.1| 100233 g14846 i0 88.991 77.3055555555556 327 31 100 5 1 324 5936339 5936015 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 25047 399 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
18435732 18435732 PRJNA606583_P_NODE_38095_length_162_cov_1.248000_g37666_i0 PRJNA606583 38095 162 1.248 2.02176 Planctomycetota bacterium 2026780 Bacteria Bacteria 58.9 2.47e-8   NR MFH1227454.1 2026780 g37666 i0 48.1 1.92592592592593 52 27 96.3 0 162 7 88 139 MFH1227454.1 tetratricopeptide repeat protein [Planctomycetota bacterium] diamond 312 58.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
18997688 18997688 PRJNA606583_P_NODE_19995_length_267_cov_3.286957_g19566_i0 PRJNA606583 19995 267 3.286957 8.77617519 Singulisphaera 466152 Bacteria Bacteria 429 9.659999999999999e-116   NTclustered gi|485099129|ref|NR_102524.1| 466153 g19566 i0 95.88 243.280898876405 267 8 100 2 1 267 2453 2716 Singulisphaera acidiphila strain MOB10 23S ribosomal RNA gene, complete sequence blastn 64956 429 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Singulisphaera Singulisphaera acidiphila
27806843 27806843 PRJNA606583_P_NODE_41784_length_153_cov_0.974138_g41355_i0 PRJNA606583 41784 153 0.974138 1.49043114 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42 0.0205   NR MBO7107012.1 2026799 g41355 i0 40.7 2.92156862745098 54 24 92.2 3 10 150 19 71 MBO7107012.1 ATP-binding cassette domain-containing protein [Verrucomicrobiota bacterium] diamond 447 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;