RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA606583", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA606583 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
583582 583582 PRJNA606583_P_NODE_37781_length_163_cov_1.238095_g37352_i0 PRJNA606583 37781 163 1.238095 2.01809485 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 174 2.78e-39   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g37352 i0 86.061 76.9877300613497 165 20 100 3 1 163 1104239 1104402 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 12549 174 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
1859417 1859417 PRJNA606583_P_NODE_19542_length_272_cov_2.042553_g19113_i0 PRJNA606583 19542 272 2.042553 5.55574416 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 313 1.04e-80   NTclustered gi|575456455|gb|CP007128.1| 861299 g19113 i0 87.636 43.8860294117647 275 27 100 6 1 272 3042798 3042528 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 11937 313 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
1859429 1859429 PRJNA606583_P_NODE_22302_length_245_cov_2.740385_g21873_i0 PRJNA606583 22302 245 2.740385 6.71394325 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 340 4.209999999999999e-89   NTclustered gi|2874253995|emb|OY970320.1| 246130 g21873 i0 91.837 365.559183673469 245 19 100 1 1 245 232907 233150 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 89562 340 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
10787851 10787851 PRJNA606583_P_NODE_25869_length_217_cov_3.044444_g25440_i0 PRJNA606583 25869 217 3.044444 6.60644348 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 289 1.3399999999999998e-73   NTclustered gi|2874253789|emb|OY969773.1| 412054 g25440 i0 90.783 111.290322580645 217 19 99 1 1 216 423436 423652 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 24150 289 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
23536076 23536076 PRJNA606583_P_NODE_3419_length_705_cov_2.353293_g3075_i0 PRJNA606583 3419 705 2.353293 16.59071565 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 939 0   NTclustered gi|575456455|gb|CP007128.1| 861299 g3075 i0 90.806 203.239716312057 707 57 100 6 1 705 3042980 3043680 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 143284 939 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;