RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA605033", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

  • Viridiplantae · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA605033 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10786026 10786026 PRJNA605033_P_NODE_164649_length_183_cov_2.945946_g163080_i0 PRJNA605033 164649 183 2.945946 5.39108118 Chlorella variabilis 554065 Plants Plants 54.7 0.004   NTclustered gi|552812072|ref|XM_005843564.1| 554065 g163080 i0 100 0.311475409836066 29 0 16 0 30 58 2975 3003 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59234) mRNA, complete cds blastn 57 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
15886140 15886140 PRJNA605033_P_NODE_90613_length_222_cov_2.171123_g89044_i0 PRJNA605033 90613 222 2.171123 4.81989306 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.02   NTclustered gi|2082259445|ref|XM_043067942.1| 3055 g89044 i0 100 0.126126126126126 28 0 13 0 21 48 1793 1766 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g492650v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19708301 19708301 PRJNA605033_P_NODE_162896_length_184_cov_3.771812_g161327_i0 PRJNA605033 162896 184 3.771812 6.94013408 Mantoniella tinhauana 3097027 Plants Plants 56.5 0.001   NTclustered gi|2735153281|gb|CP140066.1| 3097027 g161327 i0 100 2.30434782608696 30 0 16 0 12 41 772111 772082 Mantoniella tinhauana isolate LFS chromosome 5 blastn 424 56.5 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
26668307 26668307 PRJNA605033_P_NODE_57261_length_230_cov_1.579487_g55693_i0 PRJNA605033 57261 230 1.579487 3.6328201 Tetradesmus obliquus 3088 Plants Plants 43.1 0.0235   NR WIA36398.1 3088 g55693 i0 38.1 0.821739130434783 63 39 82.2 0 42 230 294 356 WIA36398.1 hypothetical protein OEZ86_007710 [Tetradesmus obliquus] diamond 189 43.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;