RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJNA605033", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 23 ✖

tax_kingdom 1

  • Pseudomonadati · 23 ✖

bioproject 1

  • PRJNA605033 · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1858157 1858157 PRJNA605033_P_NODE_217922_length_159_cov_1.854839_g216353_i0 PRJNA605033 217922 159 1.854839 2.94919401 Silvanigrella aquatica 1915309 Bacteria Bacteria 113 5.95e-21   NTclustered gi|1114626566|gb|CP017834.1| 1915309 g216353 i0 93.421 52.0188679245283 76 5 48 0 71 146 175153 175078 Silvanigrella aquatica strain MWH-Nonnen-W8red chromosome blastn 8271 113 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella aquatica
19707758 19707758 PRJNA605033_P_NODE_101396_length_222_cov_1.930481_g99827_i0 PRJNA605033 101396 222 1.930481 4.28566782 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 86.1 1.94e-12   NTclustered gi|469929247|gb|CP003537.1| 1184267 g99827 i0 89.552 4.79279279279279 67 7 30 0 9 75 451090 451156 Bdellovibrio exovorus JSS, complete genome blastn 1064 86.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
23534138 23534138 PRJNA605033_P_NODE_152799_length_192_cov_1.356688_g151230_i0 PRJNA605033 152799 192 1.356688 2.60484096 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 195 2.6e-45   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g151230 i0 86.264 108.71875 182 22 94 3 13 192 699332 699152 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 20874 195 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
24808412 24808412 PRJNA605033_P_NODE_202580_length_165_cov_1.169231_g201011_i0 PRJNA605033 202580 165 1.169231 1.92923115 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 298 1.61e-76   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g201011 i0 99.39 86.5090909090909 164 1 99 0 2 165 700579 700416 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 14274 298 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
25371032 25371032 PRJNA605033_P_NODE_131380_length_215_cov_1.727778_g129811_i0 PRJNA605033 131380 215 1.727778 3.7147227 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 311 2.83e-80   NTclustered gi|507148233|ref|NR_103040.1| 453816 g129811 i0 93.78 154.776744186046 209 9 96 4 9 215 776 982 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 33277 311 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
26618414 26618414 PRJNA605033_P_NODE_70741_length_222_cov_3.058824_g69172_i0 PRJNA605033 70741 222 3.058824 6.79058928 Pseudomonadati 3379134 Bacteria Bacteria 57.4 1.93e-7   NR PZP56364.1 349221 g69172 i0 100 209.459459459459 25 0 33.8 0 2 76 141 165 PZP56364.1 MAG: multidrug ABC transporter ATP-binding protein [Micavibrio aeruginosavorus] diamond 46500 57.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
27206259 27206259 PRJNA605033_P_NODE_78662_length_222_cov_2.566845_g77093_i0 PRJNA605033 78662 222 2.566845 5.6983959 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 42.7 0.0276   NR WP_235068021.1 349221 g77093 i0 56 0.337837837837838 25 11 33.8 0 148 222 258 282 WP_235068021.1 hypothetical protein [Micavibrio aeruginosavorus] diamond 75 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
27301379 27301379 PRJNA605033_P_NODE_177403_length_176_cov_2.354610_g175834_i0 PRJNA605033 177403 176 2.35461 4.1441136 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 64.7 1.82e-10   NR WP_262555052.1 959 g175834 i0 62.7 1.73863636363636 51 19 86.9 0 7 159 184 234 WP_262555052.1 diaminopimelate epimerase [Bdellovibrio bacteriovorus] diamond 306 64.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
27490962 27490962 PRJNA605033_P_NODE_30943_length_275_cov_1.308333_g29377_i0 PRJNA605033 30943 275 1.308333 3.59791575 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 65.5 2.46e-10   NR WP_061835315.1 959 g29377 i0 36.7 0.981818181818182 90 48 96 2 9 272 67 149 WP_061835315.1 cellulase family glycosylhydrolase [Bdellovibrio bacteriovorus] diamond 270 65.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
27932908 27932908 PRJNA605033_P_NODE_80505_length_222_cov_2.491979_g78936_i0 PRJNA605033 80505 222 2.491979 5.53219338 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 56.6 1.41e-8   NR MES2963011.1 3034175 g78936 i0 95.8 0.648648648648649 24 1 32.4 0 74 3 19 42 MES2963011.1 50S ribosomal protein L31 [Bdellovibrionota bacterium] diamond 144 56.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27946119 27946119 PRJNA605033_P_NODE_75805_length_222_cov_2.705882_g74236_i0 PRJNA605033 75805 222 2.705882 6.00705804 Pseudomonadati 3379134 Bacteria Bacteria 49.3 1.37e-4   NR HLW56416.1 2081706 g74236 i0 80 1.01351351351351 25 5 33.8 0 148 222 290 314 HLW56416.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 225 49.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28261644 28261644 PRJNA605033_P_NODE_96466_length_222_cov_2.032086_g94897_i0 PRJNA605033 96466 222 2.032086 4.51123092 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 56.2 4.91e-7   NR WP_021276598.1 1353530 g94897 i0 95.8 5.67567567567568 24 1 32.4 0 150 221 18 41 WP_021276598.1 phosphoribosylformylglycinamidine synthase subunit PurL, partial [Bacteriovorax sp. DB6_IX] diamond 1260 56.6 0.992932862190813 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. DB6_IX
28501314 28501314 PRJNA605033_P_NODE_242127_length_151_cov_4.094828_g240558_i0 PRJNA605033 242127 151 4.094828 6.18319028 Micavibrio sp. 2024841 Bacteria Bacteria 77.4 2.17e-16   NR HEY8189849.1 2024841 g240558 i0 64.2 1.33112582781457 67 7 99.3 1 2 151 48 114 HEY8189849.1 transcriptional repressor LexA [Micavibrio sp.] diamond 201 77.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
28753758 28753758 PRJNA605033_P_NODE_110027_length_222_cov_1.791444_g108458_i0 PRJNA605033 110027 222 1.791444 3.97700568 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 83.6 1.1e-16   NR MES2526004.1 3034175 g108458 i0 63.5 3 74 26 98.6 1 2 220 311 384 MES2526004.1 SpoVR family protein [Bdellovibrionota bacterium] diamond 666 83.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29953702 29953702 PRJNA605033_P_NODE_117151_length_222_cov_1.657754_g115582_i0 PRJNA605033 117151 222 1.657754 3.68021388 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 53.1 5.81e-6   NR MFN3455266.1 2862747 g115582 i0 100 0.324324324324324 24 0 32.4 0 220 149 126 149 MFN3455266.1 DUF2817 domain-containing protein [Pseudobdellovibrio sp.] diamond 72 53.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
30522375 30522375 PRJNA605033_P_NODE_76833_length_222_cov_2.652406_g75264_i0 PRJNA605033 76833 222 2.652406 5.88834132 Oligoflexus sp. 1971216 Bacteria Bacteria 76.3 1.91e-15   NR MBC7661452.1 1971216 g75264 i0 47.6 2.27027027027027 84 32 97.3 1 3 218 7 90 MBC7661452.1 hypothetical protein [Oligoflexus sp.] diamond 504 76.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
31375793 31375793 PRJNA605033_P_NODE_99436_length_222_cov_1.967914_g97867_i0 PRJNA605033 99436 222 1.967914 4.36876908 Bdellovibrionales bacterium RIFOXYD1_FULL_53_11 1797403 Bacteria Bacteria 48.9 1.9e-4   NR OFZ81805.1 1797403 g97867 i0 80 0.986486486486487 25 5 33.8 0 148 222 44 68 OFZ81805.1 MAG: hypothetical protein A2583_11060 [Bdellovibrionales bacterium RIFOXYD1_FULL_53_11] diamond 219 48.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYD1_FULL_53_11
31420447 31420447 PRJNA605033_P_NODE_101756_length_222_cov_1.925134_g100187_i0 PRJNA605033 101756 222 1.925134 4.27379748 Pseudomonadati 3379134 Bacteria Bacteria 48.1 3.37e-4   NR QQG36408.1 349221 g100187 i0 83.3 1.60810810810811 24 4 32.4 0 220 149 310 333 QQG36408.1 MAG: hypothetical protein HYS17_01035 [Micavibrio aeruginosavorus] diamond 357 48.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
31786669 31786669 PRJNA605033_P_NODE_77017_length_222_cov_2.641711_g75448_i0 PRJNA605033 77017 222 2.641711 5.86459842 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 52 1.09e-5   NR HEY8278017.1 3034175 g75448 i0 87.5 0.324324324324324 24 3 32.4 0 4 75 129 152 HEY8278017.1 protocatechuate 3,4-dioxygenase [Bdellovibrionota bacterium] diamond 72 52 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32166662 32166662 PRJNA605033_P_NODE_101678_length_222_cov_1.925134_g100109_i0 PRJNA605033 101678 222 1.925134 4.27379748 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 42.7 0.026   NR MDY0008922.1 2053517 g100109 i0 79.2 0.324324324324324 24 5 32.4 0 73 2 38 61 MDY0008922.1 RNA methyltransferase [Bdellovibrionales bacterium] diamond 72 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32166717 32166717 PRJNA605033_P_NODE_74738_length_222_cov_2.764706_g73169_i0 PRJNA605033 74738 222 2.764706 6.13764732 Oligoflexus sp. 1971216 Bacteria Bacteria 43.5 0.0148   NR MBC7662165.1 1971216 g73169 i0 87 0.310810810810811 23 3 31.1 0 217 149 354 376 MBC7662165.1 hypothetical protein [Oligoflexus sp.] diamond 69 43.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
32496263 32496263 PRJNA605033_P_NODE_118419_length_222_cov_1.614973_g116850_i0 PRJNA605033 118419 222 1.614973 3.58524006 Peredibacter 263370 Bacteria Bacteria 53.9 3.2e-6   NR WP_321394210.1 28202 g116850 i0 100 2.27027027027027 24 0 32.4 0 220 149 391 414 WP_321394210.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Peredibacter starrii] diamond 504 53.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
32797935 32797935 PRJNA605033_P_NODE_229700_length_155_cov_2.241667_g228131_i0 PRJNA605033 229700 155 2.241667 3.47458385 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 77.4 6.66e-15   NR MBC7372092.1 2026715 g228131 i0 74.5 1.9741935483871 51 13 98.7 0 153 1 525 575 MBC7372092.1 S9 family peptidase [Pseudobdellovibrionaceae bacterium] diamond 306 77.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;