RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA605033" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA605033 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3133821 3133821 PRJNA605033_P_NODE_58803_length_228_cov_2.000000_g57235_i0 PRJNA605033 58803 228 2 4.56 uncultured delta proteobacterium 34034 Bacteria Bacteria 63.9 9.39e-6   NTclustered gi|2874253999|emb|OY970324.1| 34034 g57235 i0 97.297 0.640350877192982 37 1 16 0 14 50 245139 245175 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 146 63.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
29038221 29038221 PRJNA605033_P_NODE_188308_length_171_cov_1.397059_g186739_i0 PRJNA605033 188308 171 1.397059 2.38897089 Candidatus Zymogenaceae bacterium 2844909 Bacteria Bacteria 55.8 3.27e-7   NR MBN1880703.1 2844909 g186739 i0 45.3 3.64912280701754 53 29 93 0 12 170 33 85 MBN1880703.1 PAS domain S-box protein [Candidatus Zymogenaceae bacterium] diamond 624 55.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Candidatus Zymogeniales Candidatus Zymogenaceae   Candidatus Zymogenaceae bacterium
32861107 32861107 PRJNA605033_P_NODE_11980_length_403_cov_1.975543_g10448_i0 PRJNA605033 11980 403 1.975543 7.96143829 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 79.7 2.55e-14   NR PIR20469.1 1973975 g10448 i0 51.9 0.602977667493797 81 36 60.3 2 150 392 69 146 PIR20469.1 MAG: hypothetical protein COV45_06045 [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16] diamond 243 79.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;